Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.1e-28 129.4 72 100.0
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 1.2e-19 99.4 72 80.6
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 5.1e-18 94.0 61 85.2
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 1.3e-16 89.4 65 81.5
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 2.2e-16 88.6 72 77.8
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 2.2e-16 88.6 70 80.0
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 8.2e-16 86.7 55 89.1
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 1.1e-15 86.3 64 82.8
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.4e-15 85.9 63 77.8
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 2.4e-15 85.1 59 83.1
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 6.9e-15 83.6 60 78.3
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 6.9e-15 83.6 64 78.1
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 6.9e-15 83.6 62 79.0
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 9.0e-15 83.2 63 82.5
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 2.0e-14 82.0 64 76.6
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 2.0e-14 82.0 64 81.2
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.0e-14 82.0 70 75.7
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 2.6e-14 81.6 65 83.1
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 3.4e-14 81.3 58 81.0
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 3.4e-14 81.3 63 81.0
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 4.5e-14 80.9 72 72.2
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 4.5e-14 80.9 70 75.7
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 4.5e-14 80.9 60 81.7
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 5.9e-14 80.5 72 70.8
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 7.7e-14 80.1 56 82.1
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.0e-13 79.7 72 72.2
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 1.0e-13 79.7 64 79.7
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 1.7e-13 79.0 48 89.6
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 1.7e-13 79.0 59 81.4
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 2.9e-13 78.2 59 78.0
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 2.9e-13 78.2 60 75.0
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 2.9e-13 78.2 61 77.0
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 3.8e-13 77.8 48 89.6
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 3.8e-13 77.8 72 72.2
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 5.0e-13 77.4 64 73.4
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 6.5e-13 77.0 72 70.8
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 8.5e-13 76.6 62 75.8
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 1.1e-12 76.3 58 75.9
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 1.1e-12 76.3 63 69.8
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 1.1e-12 76.3 65 80.0
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 1.1e-12 76.3 62 74.2
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 1.9e-12 75.5 55 83.6
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 2.5e-12 75.1 69 72.5
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 3.2e-12 74.7 63 74.6
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 7.2e-12 73.6 47 85.1
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 7.2e-12 73.6 57 82.5
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 7.2e-12 73.6 63 73.0
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 9.4e-12 73.2 48 83.3
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 9.4e-12 73.2 48 83.3
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 1.2e-11 72.8 48 83.3
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.6e-11 72.4 67 68.7
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 2.1e-11 72.0 48 83.3
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 2.1e-11 72.0 67 68.7
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.1e-11 72.0 57 73.7
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.1e-11 72.0 49 85.7
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 2.1e-11 72.0 49 85.7
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 2.7e-11 71.6 52 78.8
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 2.7e-11 71.6 70 68.6
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 2.7e-11 71.6 70 68.6
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.7e-11 71.6 53 79.2
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 3.6e-11 71.2 69 69.6
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 3.6e-11 71.2 72 65.3
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 3.6e-11 71.2 48 83.3
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 4.6e-11 70.9 50 84.0
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 6.1e-11 70.5 64 70.3
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 6.1e-11 70.5 48 87.5
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 7.9e-11 70.1 63 69.8
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 7.9e-11 70.1 58 75.9
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 7.9e-11 70.1 66 72.7
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 1.0e-10 69.7 68 66.2
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.0e-10 69.7 60 73.3
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 1.0e-10 69.7 65 70.8
ClCG09G008920 Citrullus lanatus HOM05D001590 ORTHO05D005672 1.4e-10 69.3 57 75.4
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.4e-10 69.3 61 72.1
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 1.8e-10 68.9 49 83.7
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 1.8e-10 68.9 58 77.6
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 2.3e-10 68.6 48 85.4
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 2.3e-10 68.6 48 85.4
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 3.0e-10 68.2 59 76.3
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 3.0e-10 68.2 49 81.6
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 3.0e-10 68.2 48 83.3
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 3.0e-10 68.2 70 61.4
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 3.9e-10 67.8 42 88.1
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 3.9e-10 67.8 73 63.0
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 5.1e-10 67.4 49 79.6
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 5.1e-10 67.4 66 65.2
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 5.1e-10 67.4 61 68.9
Phvul.010G019201 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 6.7e-10 67.0 89 53.9
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 6.7e-10 67.0 49 85.7
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 8.8e-10 66.6 48 81.2
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 8.8e-10 66.6 45 82.2
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 8.8e-10 66.6 57 73.7
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 1.1e-09 66.2 47 80.9
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 1.1e-09 66.2 70 62.9
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 1.1e-09 66.2 53 75.5
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 1.5e-09 65.9 48 81.2
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 1.5e-09 65.9 48 81.2
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.5e-09 65.9 45 86.7
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 1.5e-09 65.9 63 71.4
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.5e-09 65.9 53 73.6
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 2.5e-09 65.1 46 80.4
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 7.4e-09 63.5 70 65.7
THA.LOC104804811 Tarenaya hassleriana HOM05D005458 ORTHO05D005672 7.4e-09 63.5 65 64.6
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 9.7e-09 63.2 55 72.7
MD05G1174200 Malus domestica HOM05D005458 ORTHO05D005672 1.3e-08 62.8 64 60.9
Rhsim13G0046400 Rhododendron simsii HOM05D005458 ORTHO05D005672 1.3e-08 62.8 45 77.8
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 1.7e-08 62.4 41 82.9
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 2.8e-08 61.6 44 81.8
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 2.8e-08 61.6 61 70.5
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 3.7e-08 61.2 59 71.2
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 4.8e-08 60.8 67 62.7
Cc01_g16920 Coffea canephora HOM05D005458 ORTHO05D005672 4.8e-08 60.8 55 69.1
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 6.3e-08 60.5 45 75.6
Medtr8g013640 Medicago truncatula HOM05D005458 ORTHO05D005672 6.3e-08 60.5 61 65.6
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 8.2e-08 60.1 63 63.5
Rhsim04G0088400 Rhododendron simsii HOM05D005388 ORTHO05D006281 1.1e-07 59.7 48 72.9
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 1.4e-07 59.3 43 81.4
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 1.8e-07 58.9 45 80.0
Psat4g203440 Pisum sativum HOM05D005458 ORTHO05D005672 1.8e-07 58.9 60 65.0
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 4.1e-07 57.8 53 73.6
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 5.3e-07 57.4 64 62.5
Ah.05g178960 Amaranthus hybridus HOM05D005458 ORTHO05D005672 1.2e-06 56.2 43 74.4
C08p07830 Brassica napus HOM05D005458 ORTHO05D005672 3.4e-06 54.7 42 78.6
BolC8t47637H Brassica oleracea HOM05D005458 ORTHO05D005672 3.4e-06 54.7 42 78.6
AL8G12500 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 4.5e-06 54.3 53 67.9


User provided reference genes

Program Settings