Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G044600 Populus trichocarpa HOM05D001014 ORTHO05D000896 2.5e-69 265.4 139 100.0
Sabra14G0032500 Salix brachista HOM05D001014 ORTHO05D000896 1.9e-13 79.7 56 75.0
Potri.014G044700 Populus trichocarpa HOM05D001014 ORTHO05D000896 4.3e-13 78.6 146 41.1
Atru.chr5.168 Acer truncatum HOM05D001014 ORTHO05D037881 1.1e-08 63.9 48 62.5
Lj5g0003958 Lotus japonicus HOM05D001014 ORTHO05D000896 1.4e-08 63.5 62 51.6
Atru.chr5.167 Acer truncatum HOM05D001014 ORTHO05D037881 5.4e-08 61.6 48 60.4
Lj3g0024136 Lotus japonicus HOM05D001014 ORTHO05D000896 5.4e-08 61.6 48 62.5
Manes.05G052800 Manihot esculenta HOM05D001014 ORTHO05D000896 5.4e-08 61.6 61 59.0
Phvul.002G317700 Phaseolus vulgaris HOM05D001014 ORTHO05D000896 5.4e-08 61.6 63 52.4
QL04p031181 Quercus lobata HOM05D001014 ORTHO05D000896 5.4e-08 61.6 48 60.4
Ca_23130_v3 Cicer arietinum L. HOM05D001014 ORTHO05D000896 7.1e-08 61.2 56 51.8
Duzib248G1557 Durio zibethinus HOM05D001014 ORTHO05D000896 9.3e-08 60.8 111 36.9
VMungo0251G3271 Vigna mungo HOM05D001014 ORTHO05D000896 9.3e-08 60.8 63 52.4
Lj2g0025548 Lotus japonicus HOM05D001014 ORTHO05D000896 1.2e-07 60.5 48 56.2
Medtr1g110370 Medicago truncatula HOM05D001014 ORTHO05D000896 1.2e-07 60.5 48 54.2
Aqoxy3G02803 Aquilegia oxysepala HOM05D001014 ORTHO05D000896 2.1e-07 59.7 48 58.3
DCAR_025074 Daucus carota HOM05D001014 ORTHO05D000896 2.1e-07 59.7 110 35.5
HanXRQChr06g0164471 Helianthus annuus HOM05D001014 ORTHO05D000896 2.1e-07 59.7 62 53.2
HanXRQChr06g0168731 Helianthus annuus HOM05D001014 ORTHO05D000896 2.1e-07 59.7 136 36.0
Hma1.2p1_0729F.1_g209500 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 2.1e-07 59.7 110 37.3
GSVIVG01011869001 Vitis vinifera HOM05D001014 ORTHO05D000896 2.1e-07 59.7 54 51.9
Hma1.2p1_1740F.1_g300031 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 2.7e-07 59.3 68 47.1
Lsat_1_v5_gn_4_16280 Lactuca sativa HOM05D001014 ORTHO05D000896 2.7e-07 59.3 66 45.5
Lalb_Chr24g0397871 Lupinus albus HOM05D001014 ORTHO05D000896 2.7e-07 59.3 64 46.9
MD06G1054500 Malus domestica HOM05D001014 ORTHO05D000896 2.7e-07 59.3 63 50.8
TWI23G0475 Tripterygium wilfordii HOM05D001014 ORTHO05D000896 2.7e-07 59.3 45 57.8
Actinidia16667 Actinidia chinensis HOM05D001014 ORTHO05D000896 3.5e-07 58.9 97 39.2
Cc11_g09900 Coffea canephora HOM05D001014 ORTHO05D000896 3.5e-07 58.9 54 51.9
Gohir.A08G059400 Gossypium hirsutum HOM05D001014 ORTHO05D000896 3.5e-07 58.9 52 53.8
Gohir.D08G068600 Gossypium hirsutum HOM05D001014 ORTHO05D000896 3.5e-07 58.9 52 53.8
Gorai.004G071800 Gossypium raimondii HOM05D001014 ORTHO05D000896 3.5e-07 58.9 52 53.8
Medtr6g008660 Medicago truncatula HOM05D001014 ORTHO05D000896 3.5e-07 58.9 85 41.2
SalBow5G0767 Salvia bowleyana HOM05D001014 ORTHO05D000896 3.5e-07 58.9 52 55.8
SalBow5G4056 Salvia bowleyana HOM05D001014 ORTHO05D000896 3.5e-07 58.9 52 55.8
Lalb_Chr14g0371061 Lupinus albus HOM05D001014 ORTHO05D000896 4.6e-07 58.5 64 48.4
SGA_v2.0_scaffold43G16529 Striga asiatica HOM05D001014 ORTHO05D000896 4.6e-07 58.5 58 53.4
TAR374G1540 Trochodendron aralioides HOM05D001014 ORTHO05D000896 4.6e-07 58.5 105 33.3
GSVIVG01005818001 Vitis vinifera HOM05D001014 ORTHO05D000896 4.6e-07 58.5 65 47.7
arahy.Tifrunner.gnm1.ann1.9KP105 Arachis hypogaea HOM05D001014 ORTHO05D000896 6.0e-07 58.2 101 34.7
CSS0007170 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 6.0e-07 58.2 48 54.2
CSS0023383 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 6.0e-07 58.2 48 54.2
Ca_21991_v3 Cicer arietinum L. HOM05D001014 ORTHO05D000896 6.0e-07 58.2 48 54.2
Dinv39176 Davidia involucrata HOM05D001014 ORTHO05D000896 6.0e-07 58.2 54 55.6
Aa31LG10G14510 Aethionema arabicum HOM05D001014 ORTHO05D000896 7.9e-07 57.8 101 41.6
arahy.Tifrunner.gnm1.ann1.2IFY3G Arachis hypogaea HOM05D001014 ORTHO05D000896 7.9e-07 57.8 61 45.9
CAN.G610.63 Capsicum annuum HOM05D001014 ORTHO05D000896 7.9e-07 57.8 50 46.0
Ca_11149_v3 Cicer arietinum L. HOM05D001014 ORTHO05D000896 7.9e-07 57.8 100 33.0
Dinv44078 Davidia involucrata HOM05D001014 ORTHO05D000896 7.9e-07 57.8 109 37.6
Migut.B01555 Erythranthe guttata HOM05D001014 ORTHO05D000896 7.9e-07 57.8 51 54.9
Hma1.2p1_1136F.1_g260600 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 7.9e-07 57.8 72 45.8
Hma1.2p1_1952F.1_g308810 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 7.9e-07 57.8 72 45.8
Lalb_Chr10g0100091 Lupinus albus HOM05D001014 ORTHO05D000896 7.9e-07 57.8 56 50.0
Os05g0551600 Oryza sativa ssp. japonica HOM05D001014 ORTHO05D000896 7.9e-07 57.8 48 54.2
unitig_22.g5779 Utricularia gibba HOM05D001014 ORTHO05D000896 7.9e-07 57.8 54 46.3
Lj4g0011640 Lotus japonicus HOM05D001014 ORTHO05D000896 1.0e-06 57.4 48 54.2
Lalb_Chr02g0145861 Lupinus albus HOM05D001014 ORTHO05D000896 1.0e-06 57.4 60 50.0
Lalb_Chr13g0290451 Lupinus albus HOM05D001014 ORTHO05D000896 1.0e-06 57.4 64 42.2
MBI09_g35838_MAGBIO Magnolia biondii HOM05D001014 ORTHO05D000896 1.0e-06 57.4 47 55.3
Manes.01G271700 Manihot esculenta HOM05D001014 ORTHO05D000896 1.0e-06 57.4 61 57.4
Nn4g23898 Nelumbo nucifera HOM05D001014 ORTHO05D000896 1.0e-06 57.4 105 36.2
Thecc.01G392000 Theobroma cacao HOM05D001014 ORTHO05D000896 1.0e-06 57.4 99 35.4
TPR.G4867 Trifolium pratense HOM05D001014 ORTHO05D000896 1.0e-06 57.4 48 50.0
TAR371G0250 Trochodendron aralioides HOM05D001014 ORTHO05D000896 1.0e-06 57.4 105 35.2
Actinidia35094 Actinidia chinensis HOM05D001014 ORTHO05D000896 1.3e-06 57.0 58 41.4
Eucgr.E00401 Eucalyptus grandis HOM05D001014 ORTHO05D000896 1.3e-06 57.0 110 36.4
Oeu035670.1 Olea europaea HOM05D001014 ORTHO05D000896 1.3e-06 57.0 112 34.8
Psat4g073360 Pisum sativum HOM05D001014 ORTHO05D000896 1.3e-06 57.0 48 52.1
Rhsim12G0085500 Rhododendron simsii HOM05D001014 ORTHO05D000896 1.3e-06 57.0 48 54.2
TPR.G37584 Trifolium pratense HOM05D001014 ORTHO05D000896 1.3e-06 57.0 48 52.1
TAR374G1372 Trochodendron aralioides HOM05D001014 ORTHO05D000896 1.3e-06 57.0 107 35.5
arahy.Tifrunner.gnm1.ann1.7A1A6G Arachis hypogaea HOM05D001014 ORTHO05D000896 1.7e-06 56.6 48 56.2
arahy.Tifrunner.gnm1.ann1.YV2IKS Arachis hypogaea HOM05D001014 ORTHO05D000896 1.7e-06 56.6 48 56.2
Duzib133G1174 Durio zibethinus HOM05D001014 ORTHO05D000896 1.7e-06 56.6 99 35.4
Glyma.17G144400 Glycine max HOM05D001014 ORTHO05D000896 1.7e-06 56.6 48 52.1
Phvul.003G223000 Phaseolus vulgaris HOM05D001014 ORTHO05D000896 1.7e-06 56.6 48 52.1
Phvul.007G029200 Phaseolus vulgaris HOM05D001014 ORTHO05D000896 1.7e-06 56.6 59 47.5
Prupe.2G125500 Prunus persica HOM05D001014 ORTHO05D000896 1.7e-06 56.6 52 53.8
HPP92_008195 Vanilla planifolia HOM05D001014 ORTHO05D000896 1.7e-06 56.6 56 44.6
HPP92_011526 Vanilla planifolia HOM05D001014 ORTHO05D000896 1.7e-06 56.6 47 53.2
VMungo0251G2831 Vigna mungo HOM05D001014 ORTHO05D000896 1.7e-06 56.6 48 52.1
VMungo0720G2796 Vigna mungo HOM05D001014 ORTHO05D000896 1.7e-06 56.6 59 47.5
MSTRG.17141 Avicennia marina HOM05D001014 ORTHO05D000896 2.3e-06 56.2 52 50.0
EL10Ac8g18283 Beta vulgaris HOM05D001014 ORTHO05D000896 2.3e-06 56.2 50 44.0
CARHR038740 Cardamine hirsuta HOM05D001014 ORTHO05D000896 2.3e-06 56.2 66 45.5
AUR62021299 Chenopodium quinoa HOM05D001014 ORTHO05D000896 2.3e-06 56.2 47 51.1
AUR62033217 Chenopodium quinoa HOM05D001014 ORTHO05D000896 2.3e-06 56.2 47 51.1
ECA236G1391 Erigeron canadensis HOM05D001014 ORTHO05D000896 2.3e-06 56.2 111 35.1
Eucgr.D02104 Eucalyptus grandis HOM05D001014 ORTHO05D000896 2.3e-06 56.2 48 56.2
FvH4_7g09720 Fragaria vesca HOM05D001014 ORTHO05D000896 2.3e-06 56.2 57 50.9
Glyma.05G062500 Glycine max HOM05D001014 ORTHO05D000896 2.3e-06 56.2 54 51.9
Manes.02G041700 Manihot esculenta HOM05D001014 ORTHO05D000896 2.3e-06 56.2 48 54.2
Oeu063223.1 Olea europaea HOM05D001014 ORTHO05D000896 2.3e-06 56.2 104 34.6
Psat4g225560 Pisum sativum HOM05D001014 ORTHO05D000896 2.3e-06 56.2 49 55.1
Prupe.1G313700 Prunus persica HOM05D001014 ORTHO05D000896 2.3e-06 56.2 44 52.3
Sabra08G0093100 Salix brachista HOM05D001014 ORTHO05D000896 2.3e-06 56.2 112 33.9
SGA_v2.0_scaffold116G32304 Striga asiatica HOM05D001014 ORTHO05D000896 2.3e-06 56.2 58 50.0
vmacro10573 Vaccinium macrocarpon HOM05D001014 ORTHO05D000896 2.3e-06 56.2 48 54.2
Actinidia31509 Actinidia chinensis HOM05D001014 ORTHO05D000896 3.0e-06 55.8 50 50.0
AL1G39960 Arabidopsis lyrata HOM05D001014 ORTHO05D000896 3.0e-06 55.8 44 54.5
arahy.Tifrunner.gnm1.ann1.HJ27AX Arachis hypogaea HOM05D001014 ORTHO05D038819 3.0e-06 55.8 59 47.5
CSS0022895 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 3.0e-06 55.8 44 59.1
Haze_07938 Corylus avellana HOM05D001014 ORTHO05D000896 3.0e-06 55.8 54 44.4
Duzib138G0015 Durio zibethinus HOM05D001014 ORTHO05D000896 3.0e-06 55.8 99 34.3
Eucgr.G02307 Eucalyptus grandis HOM05D001014 ORTHO05D000896 3.0e-06 55.8 48 45.8
Thhalv10008407m.g Eutrema salsugineum HOM05D001014 ORTHO05D000896 3.0e-06 55.8 50 52.0
Lj5g0027592 Lotus japonicus HOM05D001014 ORTHO05D000896 3.0e-06 55.8 48 47.9
Lalb_Chr16g0382931 Lupinus albus HOM05D001014 ORTHO05D000896 3.0e-06 55.8 102 38.2
Peaxi162Scf00346g01015 Petunia axillaris HOM05D001014 ORTHO05D000896 3.0e-06 55.8 48 52.1
RcHm_v2.0_Chr4g0434851 Rosa chinensis HOM05D001014 ORTHO05D000896 3.0e-06 55.8 53 49.1
SalBow5G2054 Salvia bowleyana HOM05D001014 ORTHO05D000896 3.0e-06 55.8 41 63.4
Sp1g35690 Schrenkiella parvula HOM05D001014 ORTHO05D000896 3.0e-06 55.8 77 40.3
Hund26349 Selenicereus undatus HOM05D001014 ORTHO05D000896 3.0e-06 55.8 47 51.1
TAR622G0562 Trochodendron aralioides HOM05D001014 ORTHO05D000896 3.0e-06 55.8 44 59.1
HPP92_006397 Vanilla planifolia HOM05D001014 ORTHO05D000896 3.0e-06 55.8 46 52.2
GSVIVG01008316001 Vitis vinifera HOM05D001014 ORTHO05D000896 3.0e-06 55.8 55 45.5
Actinidia13656 Actinidia chinensis HOM05D001014 ORTHO05D000896 3.9e-06 55.5 100 39.0
arahy.Tifrunner.gnm1.ann1.AGG1KT Arachis hypogaea HOM05D001014 ORTHO05D038819 3.9e-06 55.5 59 47.5
arahy.Tifrunner.gnm1.ann1.PRF4ET Arachis hypogaea HOM05D001014 ORTHO05D000896 3.9e-06 55.5 78 42.3
Cfa012695 Carpinus fangiana HOM05D001014 ORTHO05D000896 3.9e-06 55.5 63 39.7
CDE06G1037 Ceratophyllum demersum HOM05D001014 ORTHO05D000896 3.9e-06 55.5 127 34.6
Dinv15695 Davidia involucrata HOM05D001014 ORTHO05D000896 3.9e-06 55.5 48 52.1
Duzib084G1008 Durio zibethinus HOM05D001014 ORTHO05D000896 3.9e-06 55.5 55 49.1
Gorai.007G086800 Gossypium raimondii HOM05D001014 ORTHO05D000896 3.9e-06 55.5 99 33.3
Medtr4g100570 Medicago truncatula HOM05D001014 ORTHO05D000896 3.9e-06 55.5 48 50.0
Psat6g225920 Pisum sativum HOM05D001014 ORTHO05D000896 3.9e-06 55.5 48 47.9
Potri.014G044800 Populus trichocarpa HOM05D001014 ORTHO05D000896 3.9e-06 55.5 44 61.4
Sopen05g004920 Solanum pennellii HOM05D001014 ORTHO05D000896 3.9e-06 55.5 48 52.1
PGSC0003DMG400014573 Solanum tuberosum HOM05D001014 ORTHO05D000896 3.9e-06 55.5 48 52.1
SGA_v2.0_scaffold153G36921 Striga asiatica HOM05D001014 ORTHO05D000896 3.9e-06 55.5 45 55.6
Actinidia38375 Actinidia chinensis HOM05D001014 ORTHO05D000896 5.1e-06 55.1 99 36.4
Ah.09g229870 Amaranthus hybridus HOM05D001014 ORTHO05D000896 5.1e-06 55.1 53 45.3
AT3G60410 Arabidopsis thaliana HOM05D001014 ORTHO05D000896 5.1e-06 55.1 57 50.9
BcaC07g40560 Brassica carinata HOM05D001014 ORTHO05D000896 5.1e-06 55.1 61 49.2
A09p52690 Brassica napus HOM05D001504 ORTHO05D001394 5.1e-06 55.1 61 49.2
C08p35390 Brassica napus HOM05D001504 ORTHO05D001394 5.1e-06 55.1 61 49.2
BolC8t51132H Brassica oleracea HOM05D001504 ORTHO05D001394 5.1e-06 55.1 61 49.2
BraA09t40698Z Brassica rapa HOM05D001014 ORTHO05D000896 5.1e-06 55.1 61 49.2
CAN.G402.6 Capsicum annuum HOM05D001014 ORTHO05D000896 5.1e-06 55.1 52 51.9
CiPaw.06G018500 Carya illinoinensis HOM05D001014 ORTHO05D000896 5.1e-06 55.1 54 46.3
CiPaw.12G049600 Carya illinoinensis HOM05D001014 ORTHO05D000896 5.1e-06 55.1 116 31.9
Ciclev10016320m.g Citrus clementina HOM05D001014 ORTHO05D000896 5.1e-06 55.1 54 48.1
Dinv21667 Davidia involucrata HOM05D001014 ORTHO05D000896 5.1e-06 55.1 54 51.9
Duzib251G0908 Durio zibethinus HOM05D001014 ORTHO05D000896 5.1e-06 55.1 115 34.8
Gohir.A11G076700 Gossypium hirsutum HOM05D001014 ORTHO05D000896 5.1e-06 55.1 95 35.8
Gohir.D11G081100 Gossypium hirsutum HOM05D001014 ORTHO05D000896 5.1e-06 55.1 99 33.3
Lj7A542T24 Lonicera japonica HOM05D001014 ORTHO05D000896 5.1e-06 55.1 44 56.8
Lalb_Chr06g0165981 Lupinus albus HOM05D001014 ORTHO05D000896 5.1e-06 55.1 60 48.3
Rhsim09G0105900 Rhododendron simsii HOM05D001014 ORTHO05D000896 5.1e-06 55.1 48 54.2
Sabra14G0032600 Salix brachista HOM05D001014 ORTHO05D000896 5.1e-06 55.1 44 61.4
Solyc08g078310.3 Solanum lycopersicum HOM05D001014 ORTHO05D000896 5.1e-06 55.1 54 50.0
PGSC0003DMG400026238 Solanum tuberosum HOM05D001014 ORTHO05D000896 5.1e-06 55.1 54 50.0
GSVIVG01023569001 Vitis vinifera HOM05D001014 ORTHO05D000896 5.1e-06 55.1 55 45.5
AT1G25370 Arabidopsis thaliana HOM05D001014 ORTHO05D000896 6.6e-06 54.7 48 52.1
MSTRG.852 Avicennia marina HOM05D001014 ORTHO05D000896 6.6e-06 54.7 48 47.9
Migut.N01754 Erythranthe guttata HOM05D001014 ORTHO05D000896 6.6e-06 54.7 62 45.2
FAN10G2363 Fragaria x ananassa HOM05D001014 ORTHO05D000896 6.6e-06 54.7 65 50.8
Manes.06G066300 Manihot esculenta HOM05D001014 ORTHO05D000896 6.6e-06 54.7 44 47.7
Oeu034225.1 Olea europaea HOM05D001014 ORTHO05D000896 6.6e-06 54.7 48 50.0
Oeu034226.1 Olea europaea HOM05D001014 ORTHO05D000896 6.6e-06 54.7 48 50.0
PGR042G2940 Punica granatum HOM05D001014 ORTHO05D000896 6.6e-06 54.7 64 42.2
Sc04g0006200 Simmondsia chinensis HOM05D001014 ORTHO05D000896 6.6e-06 54.7 48 50.0
SGA_v2.0_scaffold170G38780 Striga asiatica HOM05D001014 ORTHO05D000896 6.6e-06 54.7 48 47.9
TWI79G1172 Tripterygium wilfordii HOM05D001014 ORTHO05D000896 6.6e-06 54.7 61 42.6
Aqoxy3G00254 Aquilegia oxysepala HOM05D001014 ORTHO05D000896 8.7e-06 54.3 141 31.9
arahy.Tifrunner.gnm1.ann1.6XTP94 Arachis hypogaea HOM05D001014 ORTHO05D000896 8.7e-06 54.3 48 50.0
arahy.Tifrunner.gnm1.ann1.FEG3IM Arachis hypogaea HOM05D001014 ORTHO05D000896 8.7e-06 54.3 48 50.0
BcaC07g42782 Brassica carinata HOM05D001014 ORTHO05D000896 8.7e-06 54.3 61 49.2
BcaC07g42783 Brassica carinata HOM05D001014 ORTHO05D000896 8.7e-06 54.3 61 49.2
A01p36000 Brassica napus HOM05D001014 ORTHO05D000896 8.7e-06 54.3 77 40.3
BraA01t03681Z Brassica rapa HOM05D001014 ORTHO05D000896 8.7e-06 54.3 77 40.3
Carub.0001s2515 Capsella rubella HOM05D001014 ORTHO05D000896 8.7e-06 54.3 44 54.5
Glyma.07G093600 Glycine max HOM05D001014 ORTHO05D000896 8.7e-06 54.3 48 52.1
Lj2g0011517 Lotus japonicus HOM05D001014 ORTHO05D000896 8.7e-06 54.3 48 50.0
Manes.01G084300 Manihot esculenta HOM05D001014 ORTHO05D000896 8.7e-06 54.3 108 37.0
Peaxi162Scf00753g00218 Petunia axillaris HOM05D001014 ORTHO05D000896 8.7e-06 54.3 47 53.2
Potri.002G136200 Populus trichocarpa HOM05D001014 ORTHO05D000896 8.7e-06 54.3 47 57.4
QL12p011206 Quercus lobata HOM05D001014 ORTHO05D000896 8.7e-06 54.3 44 56.8
Sabra02G0105700 Salix brachista HOM05D001014 ORTHO05D000896 8.7e-06 54.3 47 57.4
PGSC0003DMG400025699 Solanum tuberosum HOM05D001014 ORTHO05D000896 8.7e-06 54.3 124 33.1
THA.LOC104820683 Tarenaya hassleriana HOM05D001014 ORTHO05D000896 8.7e-06 54.3 48 50.0
HPP92_023130 Vanilla planifolia HOM05D001014 ORTHO05D000896 8.7e-06 54.3 120 29.2
GSVIVG01018286001 Vitis vinifera HOM05D001014 ORTHO05D000896 8.7e-06 54.3 55 45.5


User provided reference genes

Program Settings