Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 2.2e-70 268.9 139 100.0
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 4.9e-57 224.6 139 84.2
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 3.1e-56 221.9 139 83.5
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 7.0e-56 220.7 136 83.8
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 2.0e-55 219.2 139 82.0
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 6.6e-54 214.2 139 81.3
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 5.6e-53 211.1 140 80.0
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 7.2e-53 210.7 139 76.3
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 9.5e-53 210.3 139 78.4
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 9.5e-53 210.3 209 60.3
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 1.2e-52 209.9 139 77.0
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 1.6e-52 209.5 139 79.1
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 3.6e-52 208.4 139 77.0
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 6.1e-52 207.6 139 77.0
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 6.1e-52 207.6 139 78.4
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 8.0e-52 207.2 139 74.8
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.4e-51 206.5 140 75.7
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 3.0e-51 205.3 139 77.0
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 4.0e-51 204.9 139 77.0
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 5.2e-51 204.5 139 77.7
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 5.2e-51 204.5 139 76.3
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 1.2e-50 203.4 140 76.4
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 1.5e-50 203.0 139 75.5
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 2.6e-50 202.2 139 75.5
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.6e-50 202.2 139 75.5
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 3.4e-50 201.8 141 75.2
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 3.4e-50 201.8 139 76.3
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 4.4e-50 201.4 139 74.1
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 4.4e-50 201.4 140 76.4
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 5.7e-50 201.1 140 74.3
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 5.7e-50 201.1 140 76.4
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 9.8e-50 200.3 139 73.4
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 9.8e-50 200.3 139 74.8
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 9.8e-50 200.3 141 72.3
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 9.8e-50 200.3 140 75.7
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 1.3e-49 199.9 139 75.5
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.3e-49 199.9 142 71.1
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.7e-49 199.5 139 74.1
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 1.7e-49 199.5 138 73.9
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 2.2e-49 199.1 140 75.0
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 2.2e-49 199.1 139 74.1
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 2.2e-49 199.1 139 72.7
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 3.7e-49 198.4 139 73.4
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 3.7e-49 198.4 137 73.7
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 4.9e-49 198.0 139 71.2
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 4.9e-49 198.0 139 74.8
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 4.9e-49 198.0 139 73.4
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 4.9e-49 198.0 139 74.1
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 4.9e-49 198.0 139 72.7
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.1e-48 196.8 139 74.8
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.8e-48 196.1 139 72.7
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 1.8e-48 196.1 139 74.1
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 3.2e-48 195.3 141 70.9
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 5.4e-48 194.5 140 74.3
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 5.4e-48 194.5 140 73.6
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 7.0e-48 194.1 139 72.7
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 7.0e-48 194.1 140 73.6
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 9.2e-48 193.7 139 72.7
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 1.2e-47 193.4 140 72.1
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 1.2e-47 193.4 139 71.2
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 1.6e-47 193.0 139 71.2
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 2.0e-47 192.6 140 68.6
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 2.0e-47 192.6 140 73.6
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 2.7e-47 192.2 139 68.3
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 2.7e-47 192.2 139 71.9
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 2.7e-47 192.2 142 69.7
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 4.6e-47 191.4 141 73.0
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 4.6e-47 191.4 141 73.0
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 5.9e-47 191.0 139 69.1
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 1.7e-46 189.5 139 69.8
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 3.0e-46 188.7 139 68.3
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 1.1e-45 186.8 141 68.8
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 1.5e-45 186.4 142 72.5
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 1.5e-45 186.4 141 70.2
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 1.5e-45 186.4 141 69.5
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 2.5e-45 185.7 138 68.1
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 2.5e-45 185.7 118 79.7
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 4.3e-45 184.9 139 69.8
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 7.3e-45 184.1 140 71.4
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 1.2e-44 183.3 139 70.5
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 1.2e-44 183.3 139 70.5
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 4.7e-44 181.4 141 67.4
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.4e-43 179.9 142 69.7
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 1.4e-43 179.9 106 80.2
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 1.8e-43 179.5 143 65.0
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 3.1e-43 178.7 107 79.4
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 4.0e-43 178.3 140 66.4
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 4.0e-43 178.3 139 67.6
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 4.0e-43 178.3 139 63.3
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 6.8e-43 177.6 141 68.1
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 8.9e-43 177.2 140 67.9
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 1.2e-42 176.8 108 77.8
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.5e-42 176.4 140 67.1
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 1.5e-42 176.4 139 66.2
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 1.5e-42 176.4 139 66.2
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 1.5e-42 176.4 139 66.2
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 1.5e-42 176.4 139 66.2
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 2.0e-42 176.0 140 65.7
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 2.6e-42 175.6 142 66.2
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 3.4e-42 175.3 132 73.5
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 9.8e-42 173.7 103 81.6
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 1.3e-41 173.3 140 65.0
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 1.7e-41 172.9 140 65.0
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 2.2e-41 172.6 131 69.5
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 2.2e-41 172.6 139 64.0
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 2.2e-41 172.6 139 66.2
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 4.9e-41 171.4 145 61.4
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 1.9e-40 169.5 107 75.7
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 5.4e-40 167.9 143 60.8
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 2.0e-39 166.0 104 77.9
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.7e-39 165.6 158 59.5
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 2.7e-39 165.6 139 62.6
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 3.5e-39 165.2 140 63.6
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 7.8e-39 164.1 130 66.2
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 8.6e-38 160.6 171 55.0
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 3.3e-37 158.7 140 58.6
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 4.3e-37 158.3 90 85.6
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 7.3e-37 157.5 146 60.3
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 2.8e-36 155.6 195 51.8
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 8.1e-36 154.1 140 59.3
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 1.1e-35 153.7 127 66.1
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 1.4e-32 143.3 141 55.3
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 2.4e-32 142.5 89 73.0
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 4.1e-32 141.7 89 73.0
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 6.0e-31 137.9 106 61.3
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 1.0e-30 137.1 70 91.4
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 1.6e-28 129.8 111 66.7
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 6.2e-28 127.9 140 54.3
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 1.4e-27 126.7 151 50.3
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 2.3e-27 125.9 89 64.0
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 4.4e-26 121.7 91 73.6
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 1.3e-25 120.2 109 63.3
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 2.2e-25 119.4 90 70.0
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 9.2e-24 114.0 135 45.2
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.3e-22 110.2 74 73.0
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 3.6e-20 102.1 90 63.3
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 8.4e-17 90.9 65 66.2
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 2.7e-15 85.9 73 68.5
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 2.0e-10 69.7 40 82.5
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 1.3e-09 67.0 37 83.8
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 2.7e-07 59.3 98 34.7
THA.LOC104799611 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 1.0e-06 57.4 127 33.1
AUR62028287 Chenopodium quinoa HOM05D002686 ORTHO05D003222 1.3e-06 57.0 98 34.7
THA.LOC104810987 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 1.3e-06 57.0 155 31.6
AL6G32280 Arabidopsis lyrata HOM05D002686 ORTHO05D003222 1.7e-06 56.6 158 28.5
AT5G20720 Arabidopsis thaliana HOM05D002686 ORTHO05D003222 1.7e-06 56.6 158 28.5
CARHR192090 Cardamine hirsuta HOM05D002686 ORTHO05D003222 1.7e-06 56.6 158 29.1
CAN.G1661.28 Capsicum annuum HOM05D002686 ORTHO05D003222 3.0e-06 55.8 132 32.6
AUR62025283 Chenopodium quinoa HOM05D002686 ORTHO05D003222 3.0e-06 55.8 138 31.9
Carub.0006s1906 Capsella rubella HOM05D002686 ORTHO05D003222 3.9e-06 55.5 158 28.5
Ca_09316_v3 Cicer arietinum L. HOM05D002686 ORTHO05D003222 3.9e-06 55.5 97 35.1
Sc20g0001070 Simmondsia chinensis HOM05D002686 ORTHO05D003222 3.9e-06 55.5 139 31.7
Ah.09g229170 Amaranthus hybridus HOM05D002686 ORTHO05D003222 8.7e-06 54.3 137 29.9
Medtr4g124910 Medicago truncatula HOM05D002686 ORTHO05D003222 8.7e-06 54.3 148 29.7
TWI63G0210 Tripterygium wilfordii HOM05D002686 ORTHO05D003222 8.7e-06 54.3 138 30.4


User provided reference genes

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