Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1715.7 860 100.0
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1599.7 912 89.9
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1593.9 862 92.6
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1517.3 865 89.1
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1469.5 859 86.5
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1459.5 861 86.4
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1459.1 863 86.1
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1456.8 859 86.1
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1453.3 855 85.6
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1439.9 853 85.7
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1434.9 858 83.9
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1433.7 847 84.7
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1431.0 858 85.1
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1427.2 862 84.3
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1426.8 862 84.2
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1426.8 862 84.3
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1424.8 864 83.6
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1424.5 854 84.5
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1422.1 852 84.0
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1420.2 857 84.2
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1417.9 838 85.4
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1417.9 857 84.2
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1416.7 857 83.4
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1416.0 849 83.9
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1415.6 855 83.4
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1414.4 839 84.4
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1414.1 855 83.5
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1413.7 855 83.4
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1412.1 860 82.8
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1411.7 827 86.2
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1407.9 855 83.2
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1407.9 863 81.8
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1407.9 855 83.3
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1407.5 854 83.8
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1407.5 856 82.5
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1406.0 851 83.4
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1403.3 853 83.5
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1402.9 853 83.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1392.9 853 82.9
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1392.1 850 82.7
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1391.3 884 80.7
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1389.4 855 82.1
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1388.2 853 83.0
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1387.5 853 81.8
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1387.1 849 82.7
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1384.4 856 82.0
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1382.9 838 83.2
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1382.1 827 83.8
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1381.7 846 82.6
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1380.2 868 81.3
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1379.8 845 82.2
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1374.4 830 82.5
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1374.4 855 81.5
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1373.6 850 81.8
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1367.1 818 83.7
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1363.2 848 81.6
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1362.1 857 81.2
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1361.3 818 83.4
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1360.1 810 84.1
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1359.7 825 82.9
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1359.4 843 81.7
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1356.7 832 82.1
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1356.7 830 82.3
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1356.7 861 79.8
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1356.7 801 84.3
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1356.3 844 81.6
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1355.1 838 82.2
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1354.0 873 75.6
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1348.6 823 82.0
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1347.4 834 80.8
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1344.3 863 79.8
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1335.9 821 81.9
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1334.3 841 79.9
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1332.8 866 78.2
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1329.7 853 79.6
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1321.6 835 80.7
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1319.7 838 79.5
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 836 79.5
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1315.1 890 77.1
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1314.7 836 79.8
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1313.5 851 78.1
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1310.0 839 78.9
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 818 81.5
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1308.9 842 79.2
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 818 81.4
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 842 79.5
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 842 79.5
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 842 79.0
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 833 79.1
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 888 74.7
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1303.5 856 78.2
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1301.2 849 78.7
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1300.8 840 79.4
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 822 79.7
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1300.0 856 78.5
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1298.9 821 80.4
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1298.9 835 80.5
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1298.5 834 78.4
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 803 81.3
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1295.4 840 78.3
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1292.7 845 77.6
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1287.3 813 80.6
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 840 79.3
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 843 77.8
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 843 77.8
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 843 77.8
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 843 77.8
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 840 79.2
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1285.0 828 78.0
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1284.6 829 78.2
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1284.6 815 80.0
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1281.5 764 84.9
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1278.8 829 79.0
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 843 76.2
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 819 78.4
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 860 76.7
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1270.0 777 82.4
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1268.8 835 78.2
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1262.3 825 77.8
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1261.9 827 78.4
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1256.5 816 78.4
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1256.5 717 86.5
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 824 77.5
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 823 73.4
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 820 77.4
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1247.3 826 75.9
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1241.9 824 78.8
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1241.9 862 75.8
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1224.9 829 77.1
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1216.8 757 81.1
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1215.3 846 75.9
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1207.6 886 71.0
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1203.7 835 75.2
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1200.7 819 75.7
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1198.3 822 74.5
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1177.9 818 72.2
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1176.4 822 73.4
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1170.6 777 75.5
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1144.8 736 80.8
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1142.9 812 72.0
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1142.9 825 71.2
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 4.6e-307 1057.7 814 70.3
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 2.8e-288 995.3 578 82.0
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 6.9e-279 964.1 630 71.3
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.1e-273 946.8 844 63.4
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 3.7e-272 941.8 552 86.8
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 8.5e-269 930.6 594 75.9
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 6.5e-261 904.4 518 85.1
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.5e-185 652.5 708 54.8
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 1.8e-154 550.8 461 60.3
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.8e-141 507.7 361 77.6
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.3e-141 507.3 309 79.9
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 3.0e-112 410.6 316 73.1
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 2.8e-102 377.5 264 71.6
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 8.3e-99 365.9 397 53.9
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.7e-91 341.7 581 45.8
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 7.1e-66 256.5 152 82.2
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.0e-59 236.1 156 76.9
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 1.1e-45 189.5 163 58.9
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 7.0e-37 160.2 503 29.2
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.9e-32 144.4 466 27.9
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 3.7e-30 137.9 76 85.5
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.6e-28 132.5 473 26.2
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.6e-25 122.5 74 78.4
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.6e-25 122.5 116 52.6
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.1e-25 122.1 472 27.3
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 2.7e-25 121.7 68 83.8
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 4.7e-25 120.9 431 28.5
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.4e-24 119.4 96 65.6
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-16 92.8 266 27.8
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 3.0e-16 91.7 144 38.9
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 4.0e-16 91.3 220 32.3
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 2.7e-12 78.6 83 47.0
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-08 63.9 70 45.7
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 1.5e-07 62.8 38 78.9


User provided reference genes

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