Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.7e-128 462.6 229 100.0
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 2.1e-126 455.7 229 97.4
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.4e-125 453.0 229 96.5
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 2.4e-125 452.2 229 96.5
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 2.4e-125 452.2 229 96.5
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 4.0e-125 451.4 229 96.5
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 4.0e-125 451.4 229 96.5
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 6.9e-125 450.7 229 96.1
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 6.9e-125 450.7 229 95.6
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 6.9e-125 450.7 229 96.1
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 9.0e-125 450.3 229 96.5
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.0e-124 449.1 226 96.5
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.0e-124 449.1 226 96.5
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 3.4e-124 448.4 229 95.6
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 5.8e-124 447.6 227 96.0
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 7.6e-124 447.2 226 96.0
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 9.9e-124 446.8 227 95.6
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 9.9e-124 446.8 227 95.6
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 9.9e-124 446.8 229 95.2
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 1.3e-123 446.4 229 94.8
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.3e-123 446.4 227 96.0
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 1.7e-123 446.0 229 94.3
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 95.2
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 94.3
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 94.8
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 94.8
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 95.2
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 6.4e-123 444.1 229 94.8
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 93.9
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 95.6
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 93.4
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 1.9e-122 442.6 229 95.2
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 2.4e-122 442.2 229 93.4
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 5.4e-122 441.0 229 93.0
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 5.4e-122 441.0 227 94.7
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 5.4e-122 441.0 229 92.1
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 5.4e-122 441.0 227 94.7
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 7.1e-122 440.7 227 94.7
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 9.3e-122 440.3 227 93.4
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 93.4
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 1.2e-121 439.9 227 93.4
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 2.1e-121 439.1 229 91.7
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 2.1e-121 439.1 227 93.8
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 2.1e-121 439.1 227 94.3
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 2.1e-121 439.1 227 93.8
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 2.7e-121 438.7 227 93.4
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 2.7e-121 438.7 228 93.9
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 6.0e-121 437.6 227 94.3
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 93.0
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 92.6
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 1.0e-120 436.8 227 93.4
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 3.9e-120 434.9 229 93.0
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 8.7e-120 433.7 227 92.5
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 1.5e-119 433.0 229 92.6
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 7.3e-119 430.6 229 91.7
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.3e-118 429.9 229 90.8
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 1.3e-118 429.9 220 93.6
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.1e-118 429.1 229 93.0
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.1e-118 429.1 227 90.7
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.8e-118 428.7 229 90.0
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 3.6e-118 428.3 228 91.2
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 6.2e-118 427.6 229 90.8
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 8.1e-118 427.2 229 90.8
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 2.4e-117 425.6 227 89.9
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 2.4e-117 425.6 229 89.5
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 3.1e-117 425.2 229 90.0
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 4.0e-117 424.9 228 89.9
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 2.0e-116 422.5 227 91.6
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 9.9e-116 420.2 231 89.6
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 2.2e-115 419.1 231 89.2
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.1e-114 416.8 227 87.7
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 1.1e-114 416.8 229 88.2
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 1.9e-114 416.0 227 89.0
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 1.9e-114 416.0 227 89.0
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 1.9e-114 416.0 227 89.0
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 1.9e-114 416.0 227 89.0
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 1.9e-114 416.0 227 89.0
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 4.2e-114 414.8 227 88.5
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 1.6e-113 412.9 229 90.4
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 4.6e-113 411.4 227 87.2
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 4.6e-113 411.4 229 87.3
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 6.0e-113 411.0 227 85.0
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 6.0e-113 411.0 226 86.7
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 1.8e-112 409.5 227 84.6
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 2.3e-112 409.1 227 87.2
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 2.3e-112 409.1 227 86.8
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 3.0e-112 408.7 226 85.8
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 3.9e-112 408.3 236 85.6
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 5.1e-112 407.9 227 86.3
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 6.7e-112 407.5 227 86.3
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 8.7e-112 407.1 227 86.3
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 2.5e-111 405.6 227 86.3
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 2.5e-111 405.6 227 85.9
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 2.5e-111 405.6 228 86.0
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 1.6e-110 402.9 228 85.1
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 1.6e-110 402.9 204 97.5
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 4.8e-110 401.4 254 79.5
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 6.9e-109 397.5 227 83.3
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 8.4e-107 390.6 201 95.0
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 8.4e-107 390.6 202 94.1
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.3e-104 383.3 229 83.0
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 5.1e-104 381.3 227 79.3
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 5.6e-103 377.9 201 91.5
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 2.1e-102 375.9 229 79.0
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 6.2e-102 374.4 229 76.0
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 6.2e-102 374.4 229 76.0
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 3.1e-101 372.1 210 83.3
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 2.0e-100 369.4 190 95.8
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 3.4e-100 368.6 191 94.8
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 4.5e-100 368.2 229 75.1
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 1.3e-99 366.7 190 93.7
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 1.7e-99 366.3 233 80.7
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 6.5e-99 364.4 219 83.6
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 6.5e-99 364.4 200 89.0
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 7.1e-98 360.9 250 75.2
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 3.9e-96 355.1 191 91.1
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 8.7e-96 354.0 185 95.7
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 5.7e-95 351.3 187 93.0
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 7.4e-95 350.9 227 75.8
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 1.3e-94 350.1 229 77.7
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 1.0e-91 340.5 228 70.6
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 1.1e-90 337.0 185 88.1
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 9.4e-90 334.0 226 73.9
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 2.0e-84 316.2 162 95.1
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 3.4e-84 315.5 164 95.1
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 7.9e-81 304.3 355 49.6
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.9e-75 285.8 160 85.6
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.3e-69 265.0 160 76.9
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.1e-58 230.7 122 90.2
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 8.0e-57 224.6 154 68.2
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.2e-56 221.9 131 78.6
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 7.8e-36 154.8 140 57.9
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.1e-28 130.2 69 89.9
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 2.9e-22 109.8 62 75.8
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 1.0e-19 101.3 124 51.6
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 3.3e-18 96.3 152 40.8
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 1.3e-14 84.3 81 53.1
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 1.3e-14 84.3 45 82.2
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.6e-12 77.4 52 65.4
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 4.6e-12 75.9 79 49.4
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 7.8e-12 75.1 49 73.5
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 5.6e-10 68.9 82 51.2
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 1.3e-06 57.8 26 96.2


User provided reference genes

Program Settings