Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 2.2e-163 578.9 296 100.0
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 4.4e-140 501.5 284 92.3
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 1.7e-120 436.4 268 85.1
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 3.4e-116 422.2 295 73.2
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 3.4e-116 422.2 295 73.2
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 3.7e-115 418.7 287 72.8
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 9.2e-114 414.1 286 74.8
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 1.2e-113 413.7 292 72.9
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 4.6e-113 411.8 298 73.8
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 4.6e-113 411.8 297 71.7
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 1.0e-112 410.6 286 73.4
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.7e-112 409.8 288 72.9
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 3.0e-112 409.1 285 73.7
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 1.9e-111 406.4 294 73.1
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 1.8e-109 399.8 275 72.7
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 2.3e-109 399.4 269 76.2
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 3.1e-109 399.1 290 69.7
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 3.1e-109 399.1 289 70.9
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 6.8e-109 397.9 282 71.3
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 6.8e-109 397.9 273 75.1
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 8.9e-109 397.5 277 72.6
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.2e-108 397.1 287 70.4
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 2.2e-107 392.9 301 67.8
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 2.2e-107 392.9 291 68.7
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 3.7e-107 392.1 276 75.0
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 1.4e-106 390.2 283 70.3
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.9e-106 389.8 288 71.2
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.9e-106 389.8 282 70.9
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 2.4e-106 389.4 286 69.2
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 2.4e-106 389.4 292 71.6
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 3.2e-106 389.0 295 69.8
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 9.2e-106 387.5 251 76.9
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 9.2e-106 387.5 321 62.9
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 2.7e-105 386.0 298 68.1
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 2.7e-105 386.0 286 68.9
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 1.0e-104 384.0 297 66.0
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 3.0e-104 382.5 301 66.8
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 3.0e-104 382.5 303 66.0
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 3.9e-104 382.1 298 65.8
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 5.1e-104 381.7 252 73.4
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 6.6e-104 381.3 279 71.3
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 8.6e-104 380.9 298 66.8
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 1.1e-103 380.6 292 66.4
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 1.1e-103 380.6 305 65.6
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 1.5e-103 380.2 306 65.4
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 4.3e-103 378.6 287 69.7
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 5.6e-103 378.3 283 69.6
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 7.3e-103 377.9 303 65.3
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 7.3e-103 377.9 292 68.8
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 9.5e-103 377.5 263 71.1
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 4.7e-102 375.2 294 67.7
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 1.1e-101 374.0 266 68.8
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 1.4e-101 373.6 298 66.4
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 4.0e-101 372.1 304 64.8
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 5.2e-101 371.7 265 68.3
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 1.5e-100 370.2 228 76.8
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 2.0e-100 369.8 294 65.6
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 2.6e-100 369.4 294 66.3
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.4e-100 368.6 291 65.3
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 1.3e-99 367.1 300 62.7
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 1.7e-99 366.7 255 70.6
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 4.9e-99 365.2 255 70.2
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 6.4e-99 364.8 255 70.6
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 8.4e-99 364.4 255 70.2
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 1.4e-98 363.6 305 64.3
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 1.9e-98 363.2 264 69.7
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 1.2e-97 360.5 290 64.5
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 1.6e-97 360.1 229 76.9
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 2.7e-97 359.4 285 64.6
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 4.6e-97 358.6 253 68.4
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 7.8e-97 357.8 258 67.4
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.7e-96 356.7 262 67.2
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 3.9e-96 355.5 258 67.8
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 5.1e-96 355.1 272 65.1
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 6.6e-96 354.8 288 64.9
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 1.1e-95 354.0 274 64.6
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 3.3e-95 352.4 355 55.8
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 5.6e-95 351.7 332 56.6
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 1.1e-93 347.4 254 67.7
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 1.4e-93 347.1 247 68.0
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 1.8e-93 346.7 304 63.8
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 4.0e-93 345.5 272 64.7
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 2.0e-92 343.2 257 67.3
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 9.9e-92 340.9 242 71.1
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 2.9e-91 339.3 287 61.7
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 3.8e-91 339.0 262 63.0
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 4.9e-91 338.6 245 68.6
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 4.9e-91 338.6 247 66.4
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 8.4e-91 337.8 299 59.9
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 5.4e-90 335.1 332 54.2
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 1.6e-89 333.6 289 61.6
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 1.3e-88 330.5 292 60.3
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 1.5e-87 327.0 228 68.4
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 2.9e-83 312.8 406 45.1
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 1.4e-82 310.5 232 67.2
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 1.6e-78 297.0 187 78.6
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 3.1e-77 292.7 190 74.2
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 2.0e-76 290.0 312 52.9
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 7.6e-76 288.1 260 62.3
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 5.5e-74 282.0 274 52.9
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 9.3e-74 281.2 245 55.5
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 4.6e-73 278.9 234 64.1
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 1.6e-70 270.4 251 55.8
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 4.0e-69 265.8 260 50.0
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 3.4e-68 262.7 270 54.1
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 4.5e-68 262.3 238 54.6
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 5.5e-66 255.4 193 62.2
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 9.6e-63 244.6 295 49.2
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 2.6e-60 236.5 234 50.4
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 1.9e-58 230.3 203 63.1
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 1.3e-56 224.2 274 43.8
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 2.8e-54 216.5 167 65.9
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 2.4e-53 213.4 198 59.1
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 6.9e-53 211.8 171 59.6
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 6.9e-53 211.8 287 43.6
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 4.6e-49 199.1 138 67.4
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 8.8e-48 194.9 263 43.7
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 2.0e-47 193.7 249 43.0
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 3.8e-43 179.5 119 73.9
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 4.1e-37 159.5 201 43.8
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 8.2e-30 135.2 163 46.6
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 2.0e-23 114.0 79 64.6
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 3.8e-19 99.8 77 57.1
PGSC0003DMG400030254 Solanum tuberosum HOM05D000561 ORTHO05D008162 7.5e-07 58.9 36 77.8
CiPaw.15G063200 Carya illinoinensis HOM05D000561 ORTHO05D008162 8.3e-06 55.5 53 58.5


User provided reference genes

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