Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 0.0e+00 2385.9 1220 100.0
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 0.0e+00 2179.4 1205 92.8
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1687.2 1226 72.7
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 0.0e+00 1680.2 1234 72.6
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1666.7 1221 72.2
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1662.5 1218 71.6
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 0.0e+00 1623.2 1237 70.8
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 0.0e+00 1609.3 1223 70.5
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 0.0e+00 1604.3 1232 69.0
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1602.8 1223 70.1
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1596.6 1223 68.9
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 0.0e+00 1593.9 1223 70.2
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 0.0e+00 1593.6 1191 71.5
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 0.0e+00 1584.3 1230 68.6
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 0.0e+00 1582.8 1243 67.9
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 0.0e+00 1567.4 1224 67.2
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 0.0e+00 1565.4 1194 71.2
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 0.0e+00 1563.1 1236 67.6
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 0.0e+00 1562.4 1245 67.4
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 0.0e+00 1560.0 1215 68.6
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1559.3 1227 67.2
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 0.0e+00 1548.5 1219 67.4
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1545.8 1182 68.4
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 0.0e+00 1527.7 1216 66.2
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 0.0e+00 1521.9 1227 66.7
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 0.0e+00 1520.4 1220 67.3
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 0.0e+00 1512.7 1222 66.1
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1510.4 1224 66.1
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 0.0e+00 1509.6 1224 66.0
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 0.0e+00 1508.8 1230 65.3
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 0.0e+00 1506.5 1224 65.5
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1506.1 1223 66.0
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 0.0e+00 1505.7 1223 65.9
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 0.0e+00 1503.4 1224 65.4
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 0.0e+00 1503.0 1230 65.8
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 0.0e+00 1499.2 1225 66.0
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1487.2 1216 66.7
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 0.0e+00 1477.2 1223 63.9
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 0.0e+00 1476.1 1221 64.1
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1474.9 1248 64.4
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 0.0e+00 1474.5 1197 67.0
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 0.0e+00 1471.8 1221 64.0
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 0.0e+00 1470.7 1211 65.4
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 0.0e+00 1468.4 1230 65.2
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 0.0e+00 1464.5 1196 65.3
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1463.0 1233 64.3
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1459.9 1216 64.7
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 0.0e+00 1455.7 1231 64.9
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1451.0 1235 63.2
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1450.3 1245 63.2
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1450.3 1245 63.2
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 0.0e+00 1449.5 1152 65.4
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1448.3 1189 65.7
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 0.0e+00 1444.5 1227 65.0
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 0.0e+00 1437.9 1238 63.2
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 0.0e+00 1435.2 1243 63.2
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 0.0e+00 1433.7 1232 63.5
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 0.0e+00 1430.2 1212 63.9
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1430.2 1165 65.1
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1422.5 1224 62.6
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 0.0e+00 1411.0 1229 63.5
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1394.8 1122 65.9
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 0.0e+00 1373.2 955 72.4
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 0.0e+00 1371.3 1217 61.6
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 0.0e+00 1368.6 1238 61.5
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1366.3 1092 65.8
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 0.0e+00 1364.7 1121 63.6
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1346.6 953 72.5
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1342.8 1078 65.7
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1339.7 1094 64.7
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 0.0e+00 1339.3 1199 60.5
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1334.3 1173 61.8
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1316.2 1226 59.3
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1315.4 1121 64.6
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 0.0e+00 1307.4 963 70.4
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 0.0e+00 1304.3 1238 58.5
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1302.0 925 72.3
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1295.8 957 70.7
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1295.0 1236 57.3
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 0.0e+00 1291.6 969 68.4
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 0.0e+00 1278.8 959 68.0
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 0.0e+00 1276.2 950 68.7
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 0.0e+00 1273.1 1220 58.3
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 0.0e+00 1262.7 1202 59.5
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1260.0 1052 66.2
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 0.0e+00 1253.0 1055 64.3
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1250.0 1101 60.7
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 0.0e+00 1244.2 1134 59.1
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1225.7 1158 57.7
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 0.0e+00 1219.5 955 65.5
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1186.4 1097 59.5
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1176.4 959 65.0
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1148.7 1042 60.9
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 0.0e+00 1126.7 887 65.8
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 0.0e+00 1125.9 1030 61.0
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 0.0e+00 1119.0 1187 54.1
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 0.0e+00 1083.2 1017 60.2
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 4.4e-303 1045.0 1108 54.1
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 7.1e-237 825.1 1286 41.9
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 7.9e-236 821.6 870 54.5
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 1.8e-232 810.4 1233 44.7
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 1.0e-230 804.7 1107 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 1.2e-228 797.7 1108 44.9
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 5.0e-214 749.2 465 83.9
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 7.7e-207 725.3 1112 41.3
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 3.3e-181 640.2 531 61.2
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 2.3e-179 634.0 597 56.3
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 2.0e-175 620.9 729 52.1
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 2.1e-164 584.3 739 47.6
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 1.1e-120 439.1 1369 29.3
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 8.2e-108 396.4 331 64.7
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 8.2e-108 396.4 331 64.7
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 8.2e-108 396.4 331 64.7
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 1.0e-94 352.8 315 57.5
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 9.7e-93 346.3 203 78.8
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 6.5e-81 307.0 180 78.9
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 3.2e-80 304.7 234 68.8
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 3.2e-80 304.7 234 68.8
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 4.4e-77 294.3 172 77.3
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 2.8e-76 291.6 257 62.6
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 5.9e-74 283.9 156 82.7
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 2.5e-72 278.5 154 81.8
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 1.0e-70 273.1 151 83.4
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 1.7e-60 239.2 133 80.5
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 2.0e-58 232.3 182 70.3
Aa31LG2G16170 Aethionema arabicum HOM05D004348 ORTHO05D006191 1.4e-51 209.5 232 57.3
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 9.5e-48 196.8 112 82.1
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 1.8e-46 192.6 175 59.4
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 1.2e-45 189.9 266 40.2
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.3e-44 186.4 295 41.7
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 3.2e-43 181.8 103 80.6
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 1.2e-42 179.9 471 31.0
Atru.chr1.1667 Acer truncatum HOM05D004348 ORTHO05D006191 8.7e-25 120.6 132 59.8
Lsat_1_v5_gn_9_67901 Lactuca sativa HOM05D004348 ORTHO05D006191 1.5e-24 119.8 99 64.6
CAN.G371.43 Capsicum annuum HOM05D004348 ORTHO05D006191 5.6e-24 117.9 220 43.2
SEGI_03645 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 7.3e-24 117.5 241 36.1
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 5.3e-22 111.3 218 39.9
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 9.0e-22 110.5 269 26.8
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 9.0e-22 110.5 276 28.3
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 3.4e-21 108.6 72 72.2
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.4e-21 108.2 282 28.4
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.4e-21 108.2 284 28.5
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.9e-20 104.8 278 29.1
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 8.4e-20 104.0 277 28.2
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.1e-19 103.6 268 27.6
Sp7g06010 Schrenkiella parvula HOM05D004348 ORTHO05D006191 1.4e-19 103.2 79 70.9
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.4e-19 102.4 263 27.8
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.2e-18 100.1 272 29.4
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.0e-17 97.1 280 27.5
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.7e-17 96.3 296 26.0
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 8.7e-17 94.0 281 26.7
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 9.6e-16 90.5 330 27.0
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.6e-15 89.7 276 27.5
Mapoly0067s0037 Marchantia polymorpha HOM05D011080 ORTHO05D000239 4.8e-15 88.2 297 24.2
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.8e-14 86.3 296 25.0
SGA_v2.0_scaffold6G03459 Striga asiatica HOM05D004348 ORTHO05D006191 1.8e-14 86.3 46 80.4
GSVIVG01009550001 Vitis vinifera HOM05D004348 ORTHO05D006191 1.3e-12 80.1 64 64.1
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.9e-12 79.0 149 30.9
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 8.4e-12 77.4 242 28.5
Mapoly0080s0029 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.1e-11 77.0 288 25.3
Cfa025012 Carpinus fangiana HOM05D012225 ORTHO05D124848 2.4e-11 75.9 271 27.7
Pp3c9_17530 Physcomitrium patens HOM05D031884 ORTHO05D311885 7.1e-11 74.3 376 24.2
Mapoly0062s0059 Marchantia polymorpha HOM05D000005 ORTHO05D000239 2.7e-10 72.4 176 29.5
Mapoly0120s0019 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.6e-10 71.6 306 26.1
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 1.8e-09 69.7 156 29.5
Cfa026732 Carpinus fangiana HOM05D012225 ORTHO05D124966 8.7e-09 67.4 268 23.5
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.1e-08 67.0 152 28.3
Lsat_1_v5_gn_9_17240 Lactuca sativa HOM05D004348 ORTHO05D006191 4.3e-08 65.1 64 53.1
SGA_v2.0_scaffold162G37946 Striga asiatica HOM05D004348 ORTHO05D006191 7.4e-08 64.3 31 87.1
Mapoly0020s0126 Marchantia polymorpha HOM05D000242 ORTHO05D000700 9.6e-08 63.9 318 25.2
Cfa023648 Carpinus fangiana HOM05D012225 ORTHO05D125365 1.6e-07 63.2 283 22.3
Mapoly0052s0114 Marchantia polymorpha HOM05D029023 ORTHO05D030122 2.4e-06 59.3 258 24.0


User provided reference genes

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