Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 4.6e-132 474.6 240 100.0
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.7e-121 439.5 240 93.3
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 5.0e-94 348.2 240 72.9
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 7.5e-90 334.3 241 71.4
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 2.4e-88 329.3 241 71.4
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 7.0e-88 327.8 240 70.8
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 6.6e-86 321.2 243 67.5
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 4.3e-85 318.5 241 68.9
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.2e-84 317.0 243 67.1
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.6e-84 316.6 243 67.1
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.6e-84 316.6 245 68.6
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.8e-83 313.2 242 67.4
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 3.1e-83 312.4 249 66.3
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 2.6e-82 309.3 241 62.7
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 4.4e-82 308.5 245 62.4
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 5.8e-82 308.1 241 64.7
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 5.8e-82 308.1 241 64.7
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.2e-81 306.2 244 64.3
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 2.4e-80 302.8 242 62.4
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 2.0e-79 299.7 247 63.2
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.0e-79 299.7 245 66.1
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 7.8e-79 297.7 249 60.6
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 7.8e-79 297.7 250 63.6
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 7.8e-79 297.7 225 68.9
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-78 297.4 240 62.9
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.0e-78 295.8 242 61.2
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 3.0e-78 295.8 244 61.5
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 6.6e-78 294.7 247 59.9
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 6.6e-78 294.7 243 61.7
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 2.8e-76 289.3 243 64.2
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 3.6e-76 288.9 246 61.4
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 4.7e-76 288.5 240 64.2
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.1e-75 287.3 240 62.5
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.4e-75 287.0 241 61.0
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.4e-75 287.0 247 59.5
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 6.8e-75 284.6 243 63.0
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.8e-75 284.6 241 61.4
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 8.9e-75 284.3 242 58.7
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.2e-74 283.9 243 62.1
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 2.0e-74 283.1 241 63.1
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.0e-74 283.1 250 59.6
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 2.0e-74 283.1 240 62.1
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.6e-74 282.7 247 59.9
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 3.4e-74 282.3 246 60.2
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 4.4e-74 282.0 245 60.0
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 4.4e-74 282.0 245 60.0
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 4.4e-74 282.0 229 65.5
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 4.4e-74 282.0 246 61.8
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 4.4e-74 282.0 241 61.8
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.5e-74 281.2 205 68.3
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 7.5e-74 281.2 245 63.7
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.3e-73 280.4 238 59.7
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.7e-73 280.0 232 63.4
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.7e-73 280.0 239 61.1
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.7e-73 280.0 243 61.3
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.2e-73 279.6 241 60.6
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 2.9e-73 279.3 244 62.3
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 2.9e-73 279.3 247 59.1
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 2.9e-73 279.3 242 61.6
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 2.9e-73 279.3 243 60.9
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.7e-73 278.9 251 59.8
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.4e-72 276.9 227 63.9
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.4e-72 276.9 257 57.2
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.9e-72 276.6 246 58.5
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.9e-72 276.6 257 57.6
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.2e-72 275.8 242 59.1
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.2e-72 275.8 243 60.5
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 4.1e-72 275.4 243 60.5
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 5.4e-72 275.0 245 62.9
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 5.4e-72 275.0 245 62.9
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 5.4e-72 275.0 234 61.1
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 5.4e-72 275.0 240 59.6
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 5.4e-72 275.0 221 66.1
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 9.2e-72 274.2 228 64.5
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 9.2e-72 274.2 184 73.4
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 9.2e-72 274.2 227 63.9
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 9.2e-72 274.2 227 63.9
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-71 273.9 178 73.6
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.6e-71 273.5 227 63.0
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 2.7e-71 272.7 184 73.4
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.7e-71 272.7 184 72.8
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 3.5e-71 272.3 244 61.9
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 3.5e-71 272.3 227 63.0
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 3.5e-71 272.3 227 63.0
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 3.5e-71 272.3 232 62.9
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 4.6e-71 271.9 235 58.3
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 4.6e-71 271.9 243 60.1
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 6.0e-71 271.6 182 70.9
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 7.8e-71 271.2 240 58.8
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 7.8e-71 271.2 245 57.6
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.3e-70 269.6 246 58.9
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.0e-70 269.2 182 72.0
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 3.0e-70 269.2 260 58.1
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 5.1e-70 268.5 185 70.8
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 8.6e-70 267.7 228 62.3
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.5e-69 266.9 244 58.2
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.5e-69 266.9 237 59.1
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 2.5e-69 266.2 243 58.0
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 4.3e-69 265.4 241 59.3
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 5.6e-69 265.0 241 58.9
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.1e-68 263.1 178 71.3
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 3.6e-68 262.3 252 58.3
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 6.2e-68 261.5 240 55.8
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 8.1e-68 261.2 170 71.2
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.4e-67 260.4 224 60.3
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.4e-67 260.4 236 59.7
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.8e-67 260.0 246 58.5
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 2.3e-67 259.6 244 58.6
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.3e-67 259.6 241 58.9
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 5.2e-67 258.5 240 55.4
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 5.8e-66 255.0 244 55.7
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 5.8e-66 255.0 240 56.2
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.3e-65 253.8 181 69.1
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.7e-65 253.4 244 56.6
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.1e-64 250.8 176 68.2
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 5.4e-64 248.4 239 53.6
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.6e-63 246.9 214 58.9
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.6e-63 245.4 163 71.8
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 6.0e-63 245.0 239 58.2
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.5e-61 240.4 178 64.6
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.5e-61 239.6 162 71.0
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 2.5e-61 239.6 150 76.7
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.8e-60 236.1 225 58.2
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 3.6e-60 235.7 242 52.1
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.4e-59 233.8 212 57.1
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.8e-59 233.4 184 62.0
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.2e-58 230.7 171 66.1
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.5e-58 230.3 244 50.8
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.6e-58 229.6 224 54.9
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 4.4e-58 228.8 210 55.2
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 7.6e-58 228.0 211 55.0
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.4e-57 224.9 147 72.1
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 6.4e-57 224.9 229 51.1
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.5e-55 219.2 164 67.7
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 7.8e-55 218.0 181 59.1
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 7.3e-53 211.5 189 53.4
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 3.6e-52 209.1 186 53.8
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 4.8e-52 208.8 232 48.3
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 9.9e-50 201.1 184 52.7
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 3.5e-47 192.6 162 61.7
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.0e-46 189.5 132 65.2
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 9.9e-42 174.5 112 71.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.9e-40 170.2 147 59.9
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 3.9e-38 162.5 227 38.8
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.0e-33 147.9 110 61.8
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 2.5e-32 143.3 174 42.0
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 9.3e-32 141.4 150 50.7
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 2.1e-31 140.2 160 43.8
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 4.6e-31 139.0 235 34.9
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 9.7e-29 131.3 199 39.2
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.9e-23 111.7 76 67.1
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 5.1e-22 109.0 103 56.3
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.0e-17 94.7 86 57.0
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 3.2e-16 89.7 155 38.1
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 2.0e-13 80.5 93 43.0
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 5.0e-09 65.9 54 53.7
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 8.5e-09 65.1 53 54.7
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 7.2e-08 62.0 56 53.6


User provided reference genes

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