Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 6.4e-169 597.4 322 100.0
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 5.1e-134 481.5 326 82.5
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.1e-133 480.3 322 83.5
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 3.1e-115 419.1 318 74.2
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 6.9e-107 391.3 322 70.5
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 2.9e-105 386.0 326 69.9
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 1.6e-103 380.2 327 68.8
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 4.1e-99 365.5 342 67.5
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 2.2e-97 359.8 329 65.0
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 5.5e-96 355.1 326 66.3
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 4.7e-95 352.1 328 64.9
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 5.2e-94 348.6 331 64.7
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 5.2e-94 348.6 331 64.7
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 2.6e-93 346.3 324 67.9
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 3.7e-92 342.4 333 64.0
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.4e-91 340.5 324 61.4
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 4.5e-90 335.5 320 64.1
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 4.5e-90 335.5 293 69.6
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.9e-89 332.8 327 63.3
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.9e-89 332.8 325 62.8
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.5e-88 329.7 313 65.5
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.5e-88 329.7 313 65.8
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 1.2e-87 327.4 323 64.4
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.6e-87 327.0 328 64.0
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.2e-85 320.9 323 61.0
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 5.7e-85 318.5 306 63.1
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.2e-84 316.6 318 61.9
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.0e-81 305.4 332 60.2
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.5e-81 305.1 332 60.2
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.5e-80 303.1 332 60.2
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.2e-79 300.8 303 58.7
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 2.1e-79 300.1 354 57.1
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 2.1e-79 300.1 316 57.9
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 6.8e-78 295.0 323 57.3
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 2.6e-77 293.1 329 58.1
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 5.7e-77 292.0 296 58.4
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 1.3e-76 290.8 326 55.2
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 3.7e-76 289.3 327 58.7
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 4.9e-76 288.9 326 57.1
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 3.1e-75 286.2 313 56.9
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 7.0e-75 285.0 316 54.7
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.6e-74 283.9 286 63.6
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 4.5e-74 282.3 323 58.5
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 2.5e-72 276.6 328 54.0
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 2.5e-72 276.6 324 56.5
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 8.0e-71 271.6 328 55.2
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 2.3e-70 270.0 330 53.9
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 6.8e-70 268.5 315 53.0
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 9.8e-69 264.6 351 53.3
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.9e-68 262.3 301 56.1
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 8.3e-68 261.5 304 55.6
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 1.8e-67 260.4 276 56.5
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 3.2e-67 259.6 291 58.8
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 2.3e-65 253.4 327 52.6
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 3.0e-65 253.1 290 56.9
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.6e-65 251.5 304 54.9
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 3.3e-64 249.6 321 53.3
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 7.3e-64 248.4 327 51.7
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 9.5e-64 248.1 326 54.6
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 5.2e-62 242.3 296 52.0
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 2.0e-61 240.4 324 50.3
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 9.8e-61 238.0 313 55.0
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 9.8e-61 238.0 291 57.7
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 2.9e-60 236.5 294 52.4
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 2.9e-60 236.5 310 54.5
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 3.7e-60 236.1 277 55.2
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 1.1e-59 234.6 306 52.6
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 7.0e-59 231.9 289 53.3
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 1.0e-57 228.0 296 53.4
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 1.0e-57 228.0 302 56.3
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.7e-57 227.3 303 52.8
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 2.3e-57 226.9 303 52.5
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 3.0e-57 226.5 344 46.5
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 3.9e-57 226.1 325 48.6
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 2.5e-56 223.4 303 51.8
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 4.3e-56 222.6 259 57.1
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 5.6e-56 222.2 302 51.0
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 2.1e-55 220.3 286 51.0
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 5.8e-53 212.2 299 52.5
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 7.5e-53 211.8 328 48.5
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 2.2e-52 210.3 338 49.1
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 2.2e-52 210.3 352 44.3
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 2.2e-52 210.3 333 47.7
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.4e-51 206.8 284 51.8
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 2.1e-50 203.8 324 50.3
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 7.8e-50 201.8 295 47.8
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 1.0e-49 201.4 355 45.6
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.3e-49 201.1 359 45.1
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 2.3e-49 200.3 244 54.9
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 7.3e-48 195.3 323 50.5
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 1.6e-47 194.1 285 49.8
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 1.6e-47 194.1 295 49.5
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 1.4e-46 191.0 375 41.6
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 1.8e-46 190.7 263 51.7
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 4.0e-46 189.5 231 55.4
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 5.2e-46 189.1 283 49.8
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 1.3e-44 184.5 125 76.8
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 1.7e-44 184.1 305 47.5
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 1.7e-44 184.1 308 50.6
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 1.7e-44 184.1 321 45.8
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 3.8e-44 183.0 348 44.3
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.8e-44 183.0 285 47.7
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 6.4e-44 182.2 330 45.2
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 1.1e-43 181.4 305 46.6
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 1.1e-43 181.4 305 48.5
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.4e-43 181.0 345 42.3
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 1.4e-43 181.0 326 45.4
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 3.2e-43 179.9 151 66.9
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 7.1e-43 178.7 294 45.2
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 7.1e-43 178.7 285 46.0
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 3.5e-42 176.4 331 43.2
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 2.3e-41 173.7 310 43.5
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 2.3e-41 173.7 323 40.9
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 3.0e-41 173.3 333 44.1
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 3.0e-41 173.3 333 44.1
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 3.0e-41 173.3 329 45.3
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 3.9e-41 172.9 331 43.2
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 1.9e-40 170.6 333 44.1
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 1.6e-39 167.5 222 51.8
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 2.1e-39 167.2 292 43.2
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.8e-39 166.8 326 40.8
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 3.6e-39 166.4 320 41.2
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 1.4e-38 164.5 291 44.7
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 1.8e-38 164.1 224 54.9
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 2.4e-38 163.7 330 42.7
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 5.2e-38 162.5 333 43.5
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 5.2e-38 162.5 333 43.5
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 6.9e-38 162.2 297 41.8
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 2.6e-37 160.2 291 44.7
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 5.8e-37 159.1 294 41.5
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 7.6e-37 158.7 344 42.2
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 7.6e-37 158.7 345 41.7
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 3.8e-36 156.4 263 41.8
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 3.8e-36 156.4 263 41.8
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 6.4e-36 155.6 293 49.1
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 1.9e-35 154.1 298 41.6
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.4e-35 153.7 285 44.6
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 4.2e-35 152.9 332 38.9
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 2.1e-34 150.6 344 40.7
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 8.7e-33 145.2 175 53.7
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 1.3e-31 141.4 288 38.9
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 8.1e-31 138.7 296 41.6
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 3.1e-30 136.7 237 44.3
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 9.0e-30 135.2 301 38.5
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.2e-28 130.6 236 44.9
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 6.4e-28 129.0 231 43.3
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.6e-26 124.4 316 38.6
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 3.0e-25 120.2 107 65.4
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 6.2e-23 112.5 298 34.2
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 5.3e-22 109.4 279 37.3
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 2.4e-19 100.5 100 61.0
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.2e-18 98.2 138 47.8
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 3.9e-17 93.2 104 57.7
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.6e-13 80.5 298 28.9
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 3.4e-13 80.1 318 30.2
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 4.5e-13 79.7 66 66.7
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 8.4e-12 75.5 293 32.8
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 1.2e-10 71.6 333 34.2
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.2e-10 71.6 105 42.9
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 1.6e-10 71.2 273 29.7
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 2.3e-09 67.4 359 28.4
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 3.9e-09 66.6 342 28.4
PGR004G2192 Punica granatum HOM05D006303 ORTHO05D008007 3.9e-09 66.6 358 27.7
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 3.9e-09 66.6 272 31.6
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 1.9e-08 64.3 334 28.7
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 4.3e-08 63.2 382 26.4
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 1.3e-07 61.6 83 53.0
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 1.6e-07 61.2 350 27.1
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 1.6e-07 61.2 78 57.7
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 2.1e-07 60.8 363 28.1
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 3.7e-07 60.1 348 28.4
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 8.2e-07 58.9 86 45.3
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 8.2e-07 58.9 335 28.7
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 1.4e-06 58.2 328 25.6
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 1.8e-06 57.8 336 26.8
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 2.4e-06 57.4 371 26.7
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 2.4e-06 57.4 354 27.4
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 4.1e-06 56.6 315 27.6
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 4.1e-06 56.6 366 27.9
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 4.1e-06 56.6 366 27.9
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 4.1e-06 56.6 337 28.5
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 5.3e-06 56.2 298 28.2
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 5.3e-06 56.2 336 28.0
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 6.9e-06 55.8 308 27.9
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 6.9e-06 55.8 328 25.6
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 9.0e-06 55.5 349 25.5


User provided reference genes

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