Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 4.2e-89 332.0 269 100.0
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 3.7e-85 318.9 269 97.0
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 7.9e-80 301.2 269 92.2
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 2.5e-78 296.2 269 91.8
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.9e-73 280.0 269 88.5
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 3.3e-70 269.2 266 88.3
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.6e-69 266.9 270 87.4
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 2.2e-69 266.5 266 88.7
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.2e-69 266.5 266 88.7
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 4.8e-69 265.4 266 88.0
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 6.3e-69 265.0 266 87.6
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.3e-69 265.0 270 87.8
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.3e-69 265.0 266 88.0
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 6.3e-69 265.0 270 87.8
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 6.3e-69 265.0 266 88.0
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.4e-68 263.8 252 90.9
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 1.8e-68 263.5 267 86.1
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.8e-68 263.5 269 77.3
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 1.8e-68 263.5 266 86.5
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 3.1e-68 262.7 271 83.8
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 3.1e-68 262.7 264 87.5
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.1e-68 262.7 264 87.5
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 9.1e-68 261.2 264 86.7
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 9.1e-68 261.2 269 87.0
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 1.5e-67 260.4 269 86.2
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 2.0e-67 260.0 269 86.2
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.0e-67 260.0 273 85.3
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 3.4e-67 259.2 266 85.3
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 3.4e-67 259.2 273 84.2
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 5.0e-66 255.4 271 84.1
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 5.0e-66 255.4 252 86.9
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.1e-65 254.2 271 83.8
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.4e-65 253.8 271 83.8
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.9e-65 253.4 271 83.0
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 4.2e-65 252.3 266 85.0
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.5e-65 251.9 271 83.8
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.2e-65 251.5 266 84.6
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 1.2e-64 250.8 268 81.3
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 7.9e-64 248.1 272 83.5
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 7.9e-64 248.1 272 83.5
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 6.7e-63 245.0 248 87.5
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 1.5e-62 243.8 264 83.7
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 1.5e-62 243.8 272 82.4
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 2.0e-62 243.4 265 82.3
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 5.7e-62 241.9 275 80.0
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 9.7e-62 241.1 275 80.7
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 2.2e-61 240.0 275 81.5
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 4.8e-61 238.8 273 81.3
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.1e-60 237.7 272 82.0
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 1.4e-60 237.3 267 81.6
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 1.4e-60 237.3 267 81.6
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 4.1e-60 235.7 266 81.6
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.0e-59 233.4 271 80.8
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.0e-59 233.4 271 80.8
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 2.0e-59 233.4 269 79.9
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 2.0e-59 233.4 274 74.1
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 4.5e-59 232.3 259 81.1
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 5.9e-59 231.9 265 80.0
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 1.0e-58 231.1 275 80.4
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.0e-58 231.1 250 84.4
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 1.3e-58 230.7 274 75.9
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.2e-58 229.9 266 79.7
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.9e-58 229.6 266 79.7
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 6.5e-58 228.4 269 78.8
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 6.5e-58 228.4 264 81.1
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 8.5e-58 228.0 266 80.1
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 1.4e-57 227.3 273 79.9
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 1.9e-57 226.9 273 80.6
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 1.9e-57 226.9 264 75.0
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 3.2e-57 226.1 267 79.4
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 4.2e-57 225.7 267 80.5
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 4.2e-57 225.7 264 77.3
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 4.2e-57 225.7 252 82.5
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 4.2e-57 225.7 266 79.3
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 7.2e-57 224.9 267 78.7
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 1.2e-56 224.2 266 79.7
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 1.2e-56 224.2 269 79.9
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.6e-56 223.8 270 77.8
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 1.6e-56 223.8 266 79.7
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.6e-56 223.8 251 83.7
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 2.7e-56 223.0 267 78.3
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 2.7e-56 223.0 267 79.8
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 2.7e-56 223.0 267 79.8
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 2.7e-56 223.0 267 79.8
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 2.7e-56 223.0 267 79.8
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 2.7e-56 223.0 267 78.7
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 3.6e-56 222.6 267 79.0
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 3.6e-56 222.6 267 79.0
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 4.7e-56 222.2 264 78.0
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 6.1e-56 221.9 267 79.8
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 6.1e-56 221.9 267 79.0
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 6.1e-56 221.9 264 79.5
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 7.9e-56 221.5 243 85.6
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.4e-55 220.7 266 78.9
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 1.4e-55 220.7 266 78.6
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.8e-55 220.3 265 79.2
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 3.0e-55 219.5 251 82.5
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 6.7e-55 218.4 250 82.0
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 8.8e-55 218.0 269 75.5
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 8.8e-55 218.0 267 78.7
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 1.1e-54 217.6 264 76.9
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 1.1e-54 217.6 264 76.9
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.0e-54 216.9 265 79.2
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 2.6e-54 216.5 265 79.2
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 3.3e-54 216.1 265 79.2
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 3.3e-54 216.1 265 79.2
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 4.4e-54 215.7 229 90.0
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 5.7e-54 215.3 267 78.3
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.3e-53 214.2 244 84.0
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 1.3e-53 214.2 272 76.1
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 4.8e-53 212.2 253 81.0
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 8.2e-53 211.5 268 77.2
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.1e-52 211.1 255 79.6
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 5.3e-52 208.8 267 77.9
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 7.0e-52 208.4 265 77.0
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 7.0e-52 208.4 266 76.3
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.6e-51 207.2 271 52.4
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.0e-51 206.8 276 44.9
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 4.5e-51 205.7 255 80.0
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.7e-50 203.8 253 80.6
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 2.9e-50 203.0 270 77.4
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 1.1e-49 201.1 274 74.1
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.5e-49 200.7 265 75.1
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 1.2e-48 197.6 266 77.4
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.6e-48 197.2 233 84.1
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 2.1e-48 196.8 273 72.2
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.7e-48 196.4 267 76.0
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.0e-47 194.5 230 86.5
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.0e-47 194.5 226 87.2
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 1.4e-47 194.1 268 75.4
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.5e-46 190.7 261 70.5
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 5.7e-46 188.7 235 84.7
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 9.7e-46 188.0 217 86.2
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 4.8e-45 185.7 265 75.1
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 1.8e-44 183.7 260 73.1
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 4.1e-44 182.6 267 65.5
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 2.2e-42 176.8 229 81.7
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 2.9e-42 176.4 257 71.2
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 1.9e-41 173.7 259 70.7
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-40 169.9 237 79.3
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 6.8e-39 165.2 265 57.7
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 5.7e-38 162.2 259 70.7
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 4.5e-35 152.5 83 89.2
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 5.9e-35 152.1 210 82.4
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 6.8e-31 138.7 99 67.7
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 7.5e-30 135.2 85 80.0
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.2e-29 133.7 205 79.5
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 7.0e-28 128.6 270 64.8
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 3.5e-27 126.3 274 64.2
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 4.5e-27 125.9 95 67.4
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 4.3e-25 119.4 265 54.0
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 4.0e-23 112.8 249 59.4
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.5e-22 110.9 86 69.8
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.7e-21 107.5 74 71.6
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.4e-20 103.6 81 60.5
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 4.4e-14 82.8 53 77.4
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 4.7e-08 62.8 236 58.5
TPR.G15150 Trifolium pratense HOM05D000094 ORTHO05D001056 5.8e-06 55.8 94 35.1
PGSC0003DMG400022632 Solanum tuberosum HOM05D000094 ORTHO05D002904 9.9e-06 55.1 100 41.0


User provided reference genes

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