Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 6.3e-103 377.5 196 100.0
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 3.2e-78 295.4 181 84.5
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 6.2e-74 281.2 198 79.3
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 4.1e-70 268.5 196 75.5
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 6.6e-52 208.0 195 62.6
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 1.7e-47 193.4 202 62.4
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 4.3e-43 178.7 195 54.9
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 4.3e-35 152.1 202 47.5
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 2.8e-34 149.4 194 52.1
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 3.1e-33 146.0 175 52.6
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 4.0e-33 145.6 196 49.5
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 9.0e-33 144.4 203 51.2
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 2.6e-32 142.9 195 46.2
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 3.4e-32 142.5 196 50.5
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 4.5e-32 142.1 195 44.6
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 5.8e-32 141.7 174 50.6
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 9.9e-32 141.0 186 46.8
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.7e-31 140.2 208 44.7
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 2.2e-31 139.8 185 46.5
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 1.1e-30 137.5 197 51.3
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 1.4e-30 137.1 180 46.7
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.4e-30 137.1 180 46.7
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 7.1e-30 134.8 179 45.8
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.3e-28 130.6 185 45.4
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 5.1e-28 128.6 159 45.3
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 6.7e-28 128.3 208 47.1
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 6.7e-28 128.3 179 45.3
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.5e-27 126.3 193 45.6
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.5e-27 126.3 199 44.2
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 4.3e-27 125.6 207 41.1
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 5.6e-27 125.2 200 42.5
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 5.6e-27 125.2 210 46.7
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 9.6e-27 124.4 167 47.9
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.1e-26 123.2 199 42.2
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 2.1e-26 123.2 191 45.0
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 8.2e-26 121.3 199 46.2
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 1.1e-25 120.9 143 50.3
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.8e-25 120.2 189 45.5
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 3.1e-25 119.4 158 47.5
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 4.0e-25 119.0 195 43.6
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 4.0e-25 119.0 201 39.3
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 9.0e-25 117.9 195 45.6
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 1.2e-24 117.5 225 42.2
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 2.0e-24 116.7 175 48.6
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.7e-23 113.6 230 41.7
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 3.2e-22 109.4 159 44.0
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 5.5e-22 108.6 155 43.9
Hma1.2p1_0424F.1_g150570 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 1.6e-21 107.1 190 43.2
PGR102G0812 Punica granatum HOM05D005432 ORTHO05D004599 2.7e-21 106.3 210 45.7
Phvul.003G233700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 7.9e-21 104.8 202 41.6
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 7.9e-21 104.8 206 38.3
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 2.3e-20 103.2 201 40.3
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 3.9e-20 102.4 155 43.9
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 3.9e-20 102.4 89 59.6
Glyma.01G195300 Glycine max HOM05D005432 ORTHO05D004599 5.1e-20 102.1 163 42.3
MBI16_g39101_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 6.7e-20 101.7 176 42.0
Cpa.g.sc129.80 Carica papaya HOM05D005432 ORTHO05D004599 1.1e-19 100.9 173 46.8
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 1.5e-19 100.5 195 41.0
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 4.3e-19 99.0 195 42.1
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 5.7e-19 98.6 207 37.7
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 5.7e-19 98.6 208 39.9
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 5.7e-19 98.6 199 40.7
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 9.7e-19 97.8 199 38.2
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 2.2e-18 96.7 199 41.2
Oeu011980.1 Olea europaea HOM05D005432 ORTHO05D004599 2.2e-18 96.7 175 40.6
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 3.7e-18 95.9 146 45.2
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 1.1e-17 94.4 169 40.8
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 1.4e-17 94.0 228 35.1
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 2.4e-17 93.2 191 38.2
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 4.1e-17 92.4 198 37.4
Hma1.2p1_1085F.1_g255410 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 5.3e-17 92.0 174 40.2
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 4.5e-16 89.0 194 37.6
Migut.L00424 Erythranthe guttata HOM05D005432 ORTHO05D004599 7.7e-16 88.2 199 36.2
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.0e-15 87.8 197 36.0
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 1.3e-15 87.4 201 40.8
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 1.7e-15 87.0 204 39.7
Glyma.11G046400 Glycine max HOM05D005432 ORTHO05D004599 3.8e-15 85.9 185 37.8
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 3.8e-15 85.9 223 34.1
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 5.0e-15 85.5 155 39.4
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 6.5e-15 85.1 131 42.7
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 6.5e-15 85.1 205 35.1
Glyma.17G159600 Glycine max HOM05D005432 ORTHO05D004599 1.9e-14 83.6 209 36.4
Lsat_1_v5_gn_4_160141 Lactuca sativa HOM05D005432 ORTHO05D004599 2.5e-14 83.2 222 35.6
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 3.2e-14 82.8 210 37.6
Nn5g30641 Nelumbo nucifera HOM05D005432 ORTHO05D004599 7.2e-14 81.6 200 39.5
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 1.6e-13 80.5 152 41.4
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 6.1e-13 78.6 231 32.0
Eucgr.H02319 Eucalyptus grandis HOM05D005432 ORTHO05D004599 7.9e-13 78.2 133 40.6
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 1.0e-12 77.8 196 35.7
Nitab4.5_0000680g0150 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.0e-12 77.8 164 38.4
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 3.0e-12 76.3 153 37.9
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 8.8e-12 74.7 217 36.4
Solyc02g064570.2 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.5e-11 73.9 216 37.0
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 2.0e-11 73.6 159 35.8
Nn6g34511 Nelumbo nucifera HOM05D005432 ORTHO05D004599 3.3e-11 72.8 145 38.6
Lsat_1_v5_gn_4_160361 Lactuca sativa HOM05D005432 ORTHO05D004599 4.3e-11 72.4 179 34.1
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 5.7e-11 72.0 194 38.7
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 7.4e-11 71.6 57 59.6
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 2.8e-10 69.7 57 57.9
arahy.Tifrunner.gnm1.ann1.6CR1D2 Arachis hypogaea HOM05D005432 ORTHO05D004599 2.8e-10 69.7 62 58.1
Migut.L00423 Erythranthe guttata HOM05D005432 ORTHO05D004599 2.8e-10 69.7 165 35.2
Psat4g081760 Pisum sativum HOM05D005432 ORTHO05D004599 2.8e-10 69.7 199 37.2
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 4.8e-10 68.9 192 37.0
Sopen09g003540 Solanum pennellii HOM05D005432 ORTHO05D004599 4.8e-10 68.9 164 34.8
TPR.G24220 Trifolium pratense HOM05D005432 ORTHO05D004599 4.8e-10 68.9 189 33.3
AUR62007532 Chenopodium quinoa HOM05D022777 ORTHO05D004599 6.3e-10 68.6 164 34.8
Medtr4g097350 Medicago truncatula HOM05D005432 ORTHO05D004599 6.3e-10 68.6 195 35.9
Psat4g081120 Pisum sativum HOM05D005432 ORTHO05D004599 6.3e-10 68.6 101 49.5
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 6.3e-10 68.6 191 34.6
Aqoxy6G02535 Aquilegia oxysepala HOM05D005432 ORTHO05D004599 8.2e-10 68.2 200 31.0
Medtr4g097360 Medicago truncatula HOM05D005432 ORTHO05D004599 1.1e-09 67.8 193 37.8
Medtr5g015190 Medicago truncatula HOM05D005432 ORTHO05D004599 1.1e-09 67.8 70 51.4
CAN.G1830.3 Capsicum annuum HOM05D005432 ORTHO05D004599 1.4e-09 67.4 182 31.3
ECA232G0649 Erigeron canadensis HOM05D005432 ORTHO05D004599 1.4e-09 67.4 193 33.2
Lalb_Chr05g0225821 Lupinus albus HOM05D005432 ORTHO05D004599 1.4e-09 67.4 189 31.7
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 1.8e-09 67.0 90 44.4
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 1.8e-09 67.0 90 44.4
PGSC0003DMG400012978 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.8e-09 67.0 173 32.9
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 2.4e-09 66.6 63 50.8
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 2.4e-09 66.6 63 50.8
ECA232G3846 Erigeron canadensis HOM05D005432 ORTHO05D004599 3.1e-09 66.2 211 33.2
Solyc09g008740.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 3.1e-09 66.2 175 32.6
Sopen09g003530 Solanum pennellii HOM05D005432 ORTHO05D004599 3.1e-09 66.2 180 32.2
TPR.G24244 Trifolium pratense HOM05D005432 ORTHO05D004599 3.1e-09 66.2 100 48.0
arahy.Tifrunner.gnm1.ann1.0M6NCC Arachis hypogaea HOM05D005432 ORTHO05D004599 4.1e-09 65.9 58 55.2
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 4.1e-09 65.9 90 44.4
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 4.1e-09 65.9 90 44.4
AL3G48200 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 5.3e-09 65.5 57 56.1
A08p22730 Brassica napus HOM05D009364 ORTHO05D004599 5.3e-09 65.5 90 44.4
Lsat_1_v5_gn_4_160241 Lactuca sativa HOM05D005432 ORTHO05D004599 5.3e-09 65.5 217 32.7
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 6.9e-09 65.1 53 56.6
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 6.9e-09 65.1 53 56.6
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 6.9e-09 65.1 53 56.6
PGR004G1176 Punica granatum HOM05D005432 ORTHO05D004599 9.1e-09 64.7 207 35.3
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 1.2e-08 64.3 56 55.4
CARHR114200 Cardamine hirsuta HOM05D009364 ORTHO05D004599 1.2e-08 64.3 79 46.8
Sopen09g003550 Solanum pennellii HOM05D005432 ORTHO05D004599 1.2e-08 64.3 180 31.1
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 1.2e-08 64.3 54 53.7
CsaV3_2G016320 Cucumis sativus L. HOM05D005432 ORTHO05D004599 1.5e-08 63.9 58 58.6
Psat2g172120 Pisum sativum HOM05D005432 ORTHO05D004599 2.6e-08 63.2 61 55.7
TPR.G9336 Trifolium pratense HOM05D005432 ORTHO05D004599 2.6e-08 63.2 59 50.8
BcaB03g12334 Brassica carinata HOM05D009364 ORTHO05D004599 3.4e-08 62.8 87 41.4
Thhalv10000717m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 4.5e-08 62.4 69 49.3
CARHR246100 Cardamine hirsuta HOM05D009364 ORTHO05D004599 7.7e-08 61.6 81 42.0
Lalb_Chr16g0378951 Lupinus albus HOM05D005432 ORTHO05D004599 7.7e-08 61.6 85 48.2
Oeu021446.1 Olea europaea HOM05D005432 ORTHO05D004599 1.0e-07 61.2 176 33.5
AL7G12970 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 1.3e-07 60.8 93 39.8
MELO3C020843.2 Cucumis melo HOM05D005432 ORTHO05D004599 1.3e-07 60.8 54 59.3
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 1.3e-07 60.8 177 29.9
A03p65490 Brassica napus HOM05D009364 ORTHO05D004599 1.7e-07 60.5 78 42.3
BraA03t15601Z Brassica rapa HOM05D009364 ORTHO05D004599 1.7e-07 60.5 78 42.3
BcaNung02084 Brassica carinata HOM05D009364 ORTHO05D004599 2.2e-07 60.1 78 43.6
CDE04G1981 Ceratophyllum demersum HOM05D005432 ORTHO05D004599 2.2e-07 60.1 156 34.0
AUR62004024 Chenopodium quinoa HOM05D022777 ORTHO05D004599 2.2e-07 60.1 142 34.5
ClCG02G012170 Citrullus lanatus HOM05D005432 ORTHO05D004599 5.0e-07 58.9 77 45.5
Aa31LG7G13930 Aethionema arabicum HOM05D009364 ORTHO05D004599 6.5e-07 58.5 68 45.6
PSO541G2677 Papaver somniferum HOM05D005432 ORTHO05D004599 6.5e-07 58.5 224 28.6
ECA232G3481 Erigeron canadensis HOM05D005432 ORTHO05D004599 1.9e-06 57.0 172 30.8
BcaC06g33374 Brassica carinata HOM05D009364 ORTHO05D004599 2.5e-06 56.6 78 41.0
C07p62590 Brassica napus HOM05D009364 ORTHO05D004599 2.5e-06 56.6 78 41.0
BolC7t46674H Brassica oleracea HOM05D009364 ORTHO05D004599 2.5e-06 56.6 78 41.0
Carub.0007s0254 Capsella rubella HOM05D009364 ORTHO05D004599 2.5e-06 56.6 74 41.9
Os12g0635400 Oryza sativa ssp. japonica HOM05D028778 ORTHO05D030403 2.5e-06 56.6 70 41.4
MBI16_g16466_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 3.2e-06 56.2 78 46.2
AT4G37710 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 5.5e-06 55.5 78 43.6
CAN.G1830.2 Capsicum annuum HOM05D005432 ORTHO05D004599 7.2e-06 55.1 52 50.0


User provided reference genes

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