Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 4.0e-95 351.3 160 100.0
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.0e-90 336.7 160 95.0
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 2.9e-90 335.1 160 95.6
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 3.8e-90 334.7 160 96.2
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 5.0e-90 334.3 160 94.4
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 8.5e-90 333.6 160 94.4
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 8.5e-90 333.6 160 94.4
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.1e-89 333.2 160 94.4
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.1e-89 333.2 160 94.4
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 1.1e-89 333.2 160 94.4
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 1.5e-89 332.8 160 93.1
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 1.9e-89 332.4 160 93.8
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 4.2e-89 331.3 160 94.4
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 7.2e-89 330.5 160 93.8
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 7.2e-89 330.5 160 93.8
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 7.2e-89 330.5 160 93.8
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 7.2e-89 330.5 160 93.8
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 7.2e-89 330.5 160 93.8
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 7.2e-89 330.5 160 93.8
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 7.2e-89 330.5 160 93.8
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 7.2e-89 330.5 160 93.8
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 7.2e-89 330.5 160 93.8
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 7.2e-89 330.5 160 93.8
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.2e-88 329.7 160 94.4
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 1.6e-88 329.3 160 93.8
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 2.1e-88 328.9 160 92.5
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 4.7e-88 327.8 160 93.8
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 4.7e-88 327.8 160 93.8
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 4.7e-88 327.8 160 93.1
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 4.7e-88 327.8 158 94.3
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 4.7e-88 327.8 158 94.3
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 4.7e-88 327.8 158 94.3
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.1e-88 327.4 160 93.1
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-88 327.4 160 93.1
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 94.3
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 8.0e-88 327.0 160 93.1
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 1.0e-87 326.6 160 92.5
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 1.8e-87 325.9 160 91.2
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 6.8e-87 323.9 160 92.5
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 6.8e-87 323.9 160 91.9
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 1.5e-86 322.8 160 91.9
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 4.4e-86 321.2 160 91.9
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 4.4e-86 321.2 160 89.4
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 2.2e-85 318.9 160 88.8
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 2.8e-85 318.5 160 91.9
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 3.1e-84 315.1 158 92.4
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 4.1e-84 314.7 160 89.4
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 4.1e-84 314.7 160 89.4
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 4.1e-84 314.7 160 89.4
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 4.1e-84 314.7 160 89.4
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 4.1e-84 314.7 160 89.4
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 4.1e-84 314.7 160 89.4
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 4.1e-84 314.7 160 89.4
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 4.1e-84 314.7 160 89.4
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 4.1e-84 314.7 160 89.4
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 4.1e-84 314.7 160 89.4
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 4.1e-84 314.7 160 89.4
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 4.1e-84 314.7 160 89.4
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 7.0e-84 313.9 160 88.8
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 9.1e-84 313.5 159 88.7
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 2.0e-83 312.4 160 88.1
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 4.5e-83 311.2 160 88.1
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 4.5e-83 311.2 160 88.8
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 7.7e-83 310.5 152 92.1
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 1.3e-82 309.7 160 88.1
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 2.3e-82 308.9 160 89.4
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 1.1e-81 306.6 159 88.1
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 7.2e-81 303.9 155 89.0
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 1.2e-80 303.1 160 86.2
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 4.0e-79 298.1 145 93.1
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 5.2e-79 297.7 145 93.8
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 5.2e-79 297.7 145 93.8
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 5.2e-79 297.7 145 93.8
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 8.9e-79 297.0 143 95.1
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.3e-77 293.1 144 93.1
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 1.1e-76 290.0 160 83.1
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 9.2e-76 287.0 140 93.6
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.1e-73 280.0 160 83.1
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.9e-73 279.3 160 80.0
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 3.3e-73 278.5 160 81.2
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.6e-73 277.7 140 90.7
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 5.2e-71 271.2 150 83.3
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 1.5e-70 269.6 145 86.2
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 1.7e-69 266.2 135 90.4
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.6e-67 259.6 135 88.1
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 1.0e-66 256.9 160 76.2
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 2.3e-66 255.8 160 75.6
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.9e-65 252.7 152 79.6
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 3.6e-64 248.4 164 72.6
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 1.1e-63 246.9 160 73.8
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 3.7e-61 238.4 118 93.2
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.2e-60 235.3 133 81.2
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 2.7e-59 232.3 136 80.9
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 7.8e-59 230.7 140 75.7
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 7.3e-57 224.2 137 79.6
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 4.0e-55 218.4 135 78.5
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 3.4e-54 215.3 158 68.4
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 4.4e-54 214.9 113 86.7
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 5.8e-54 214.5 110 90.0
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 1.7e-53 213.0 101 94.1
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 1.7e-53 213.0 101 94.1
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 1.7e-53 213.0 101 94.1
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 3.7e-53 211.8 159 64.2
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 3.7e-53 211.8 159 64.2
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 3.7e-53 211.8 159 64.2
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 1.4e-52 209.9 106 92.5
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.1e-52 208.4 102 91.2
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 7.1e-52 207.6 108 86.1
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 7.1e-52 207.6 108 86.1
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 1.7e-50 203.0 103 87.4
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 3.9e-50 201.8 101 90.1
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 4.3e-49 198.4 160 63.8
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 7.3e-49 197.6 102 88.2
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 9.5e-49 197.2 113 81.4
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 9.5e-49 197.2 96 94.8
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.1e-47 193.7 110 84.5
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 5.2e-47 191.4 111 82.0
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.4e-46 188.7 112 77.7
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 7.6e-46 187.6 116 75.9
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.7e-45 186.4 110 80.0
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 4.9e-45 184.9 151 68.9
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 3.5e-43 178.7 109 76.1
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.3e-42 176.8 93 88.2
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 1.7e-42 176.4 91 87.9
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 1.9e-41 172.9 101 82.2
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 2.5e-41 172.6 84 95.2
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 1.2e-40 170.2 90 86.7
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 6.2e-40 167.9 84 91.7
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 1.4e-39 166.8 85 88.2
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 1.8e-39 166.4 84 90.5
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 1.2e-38 163.7 84 90.5
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 3.4e-38 162.2 84 89.3
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 3.4e-38 162.2 99 73.7
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 1.3e-37 160.2 83 90.4
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 3.5e-35 152.1 92 73.9
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 1.7e-34 149.8 79 84.8
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 6.6e-34 147.9 72 93.1
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.3e-32 143.7 79 83.5
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 4.8e-32 141.7 85 78.8
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 6.2e-32 141.4 101 68.3
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 1.1e-31 140.6 68 92.6
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 4.0e-31 138.7 84 77.4
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 9.0e-31 137.5 125 59.2
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 9.9e-30 134.0 65 92.3
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.6e-27 125.2 59 93.2
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.3e-26 122.9 57 96.5
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 5.1e-26 121.7 110 56.4
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 6.2e-24 114.8 59 84.7
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 5.3e-23 111.7 54 92.6
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 9.0e-23 110.9 56 91.1
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 2.2e-21 106.3 53 88.7
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 3.8e-21 105.5 53 86.8
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.8e-21 105.5 70 70.0
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 8.4e-21 104.4 50 92.0
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 2.5e-20 102.8 100 53.0
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 8.7e-18 94.4 43 93.0
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 5.6e-17 91.7 82 52.4
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 9.0e-15 84.3 42 92.9
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 3.4e-14 82.4 48 81.2
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 5.5e-12 75.1 40 82.5
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 7.9e-11 71.2 53 64.2
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 3.3e-09 65.9 68 47.1
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 7.4e-09 64.7 47 63.8
Nitab4.5_0007578g0070 Nicotiana tabacum HOM05D012508 ORTHO05D011743 6.3e-08 61.6 61 55.7
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.8e-07 60.1 89 31.5
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 9.0e-07 57.8 85 34.1
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 4.5e-06 55.5 24 95.8
Hund10567 Selenicereus undatus HOM05D001033 ORTHO05D004888 4.5e-06 55.5 39 59.0


User provided reference genes

Program Settings