Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 3.4e-71 271.6 137 100.0
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 1.1e-50 203.4 122 77.0
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 5.7e-50 201.1 121 77.7
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 9.7e-50 200.3 123 74.8
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 9.7e-50 200.3 120 80.0
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 2.8e-49 198.7 123 74.0
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 3.7e-49 198.4 124 75.8
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 4.8e-49 198.0 123 72.4
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 6.3e-49 197.6 124 75.8
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 8.2e-49 197.2 124 75.8
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.1e-48 196.8 119 78.2
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 1.8e-48 196.1 124 75.8
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 1.8e-48 196.1 126 75.4
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 5.3e-48 194.5 137 68.6
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 5.3e-48 194.5 123 74.0
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 6.9e-48 194.1 126 76.2
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 1.5e-47 193.0 124 73.4
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.5e-47 193.0 119 77.3
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 1.5e-47 193.0 126 75.4
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 2.6e-47 192.2 119 74.8
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 5.9e-47 191.0 126 73.0
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.9e-47 191.0 135 68.9
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 5.9e-47 191.0 112 83.0
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.0e-46 190.3 120 75.8
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 1.3e-46 189.9 120 72.5
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 1.7e-46 189.5 132 68.9
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.2e-46 189.1 110 83.6
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 2.9e-46 188.7 124 75.0
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 2.9e-46 188.7 124 75.0
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 2.9e-46 188.7 124 75.0
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.9e-46 188.7 123 72.4
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 3.8e-46 188.3 124 75.0
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 3.8e-46 188.3 124 73.4
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 6.5e-46 187.6 124 74.2
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 6.5e-46 187.6 134 70.9
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 8.5e-46 187.2 124 74.2
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 1.4e-45 186.4 124 73.4
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 1.9e-45 186.0 112 77.7
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 1.9e-45 186.0 123 74.0
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 2.5e-45 185.7 115 76.5
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 2.5e-45 185.7 129 69.8
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 5.5e-45 184.5 127 70.9
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 7.2e-45 184.1 122 72.1
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 7.2e-45 184.1 114 78.1
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 7.2e-45 184.1 119 72.3
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 9.4e-45 183.7 124 74.2
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.2e-44 183.3 123 71.5
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.6e-44 183.0 123 72.4
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.6e-44 183.0 119 72.3
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 2.1e-44 182.6 119 73.9
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 2.1e-44 182.6 112 75.9
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 2.7e-44 182.2 119 73.1
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.6e-44 181.8 126 71.4
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 3.6e-44 181.8 112 78.6
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 4.6e-44 181.4 112 75.0
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 6.1e-44 181.0 124 69.4
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 7.9e-44 180.6 133 68.4
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 7.9e-44 180.6 112 77.7
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 2.3e-43 179.1 112 76.8
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 2.3e-43 179.1 119 70.6
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 5.1e-43 177.9 113 74.3
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 8.8e-43 177.2 112 73.2
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.1e-42 176.8 112 75.9
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 1.1e-42 176.8 115 73.9
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.5e-42 176.4 113 73.5
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 2.0e-42 176.0 119 72.3
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 2.5e-42 175.6 138 63.0
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 3.3e-42 175.3 126 71.4
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 3.3e-42 175.3 115 73.9
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 4.3e-42 174.9 112 74.1
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 4.3e-42 174.9 133 66.9
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 7.4e-42 174.1 125 68.8
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 7.4e-42 174.1 114 75.4
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.3e-41 173.3 120 69.2
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.3e-41 173.3 122 70.5
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 1.3e-41 173.3 123 69.1
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.7e-41 172.9 124 69.4
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 1.7e-41 172.9 139 60.4
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 2.8e-41 172.2 117 69.2
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.8e-41 171.4 135 60.7
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 6.3e-41 171.0 110 75.5
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 6.3e-41 171.0 124 66.1
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 6.3e-41 171.0 119 67.2
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 1.1e-40 170.2 119 65.5
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.4e-40 169.9 134 61.9
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 2.4e-40 169.1 121 66.9
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 4.1e-40 168.3 111 73.0
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 4.1e-40 168.3 118 67.8
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 6.9e-40 167.5 109 71.6
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.5e-39 166.4 114 71.1
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 7.7e-39 164.1 123 63.4
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 2.9e-38 162.2 115 67.8
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 5.0e-38 161.4 120 65.0
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 5.0e-38 161.4 125 64.0
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.9e-37 159.5 120 65.0
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 5.5e-37 157.9 130 59.2
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 7.2e-37 157.5 128 62.5
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 9.4e-37 157.1 119 64.7
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 9.4e-37 157.1 120 65.8
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 2.1e-36 156.0 105 68.6
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 6.1e-36 154.5 116 61.2
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 7.9e-36 154.1 116 62.1
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.0e-35 153.7 132 60.6
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.0e-35 153.7 109 66.1
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.1e-34 150.2 112 65.2
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.1e-34 150.2 109 67.0
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.1e-34 150.2 121 62.0
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 2.6e-34 149.1 104 69.2
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 5.7e-34 147.9 98 71.4
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 5.7e-34 147.9 118 64.4
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.3e-33 146.7 115 60.9
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 6.3e-33 144.4 119 60.5
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.4e-32 143.3 121 60.3
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 5.3e-32 141.4 92 71.7
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 7.0e-32 141.0 89 75.3
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 7.0e-32 141.0 123 60.2
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.2e-31 140.2 120 57.5
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.2e-31 140.2 102 65.7
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 1.2e-31 140.2 92 71.7
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 2.6e-31 139.0 132 55.3
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 2.2e-30 136.0 77 81.8
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 2.9e-30 135.6 118 59.3
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 6.5e-30 134.4 115 61.7
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.2e-28 130.2 110 58.2
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 6.1e-28 127.9 112 58.0
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 5.2e-27 124.8 76 73.7
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 8.8e-27 124.0 96 59.4
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 1.1e-24 117.1 128 53.9
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 1.8e-24 116.3 111 56.8
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 1.8e-24 116.3 121 56.2
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.2e-23 113.6 72 73.6
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 2.6e-23 112.5 70 78.6
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 5.9e-23 111.3 69 78.3
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.3e-22 110.2 109 50.5
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 8.5e-22 107.5 72 70.8
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.4e-19 100.1 73 65.8
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.2e-18 97.1 123 47.2
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 9.7e-18 94.0 119 47.9
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 4.8e-17 91.7 93 57.0
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 4.8e-17 91.7 93 51.6
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 8.3e-17 90.9 62 71.0
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 2.9e-14 82.4 104 46.2
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.5e-13 80.1 47 76.6
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.5e-13 78.2 116 39.7
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 1.8e-11 73.2 103 43.7
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 1.2e-10 70.5 44 65.9
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.2e-10 70.5 42 76.2
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.1e-08 62.4 47 53.2
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.6e-07 60.1 46 58.7


User provided reference genes

Program Settings