Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 2.0e-269 931.8 462 100.0
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 9.9e-256 886.3 462 95.2
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 7.0e-193 677.6 472 72.5
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.8e-185 652.9 464 69.8
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.0e-183 647.1 458 69.7
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 1.0e-183 647.1 402 78.4
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.2e-181 640.2 465 68.6
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 1.0e-180 637.1 401 76.8
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 1.0e-180 637.1 399 76.7
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.4e-180 636.7 464 70.0
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 1.2e-179 633.6 464 69.0
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 3.4e-179 632.1 466 69.5
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 1.7e-178 629.8 392 77.0
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 2.8e-178 629.0 463 69.5
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 3.1e-177 625.5 428 71.7
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 1.2e-176 623.6 466 69.1
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 2.0e-176 622.9 448 69.4
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 2.7e-176 622.5 471 68.8
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 2.7e-176 622.5 413 74.1
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 4.5e-176 621.7 464 69.4
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 4.5e-176 621.7 465 68.4
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 2.2e-175 619.4 462 66.7
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 2.9e-175 619.0 436 69.3
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 6.5e-175 617.8 412 72.1
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 8.5e-175 617.5 469 67.6
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 1.1e-174 617.1 415 73.0
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 2.5e-174 615.9 465 66.0
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 3.2e-174 615.5 462 66.0
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 4.2e-174 615.1 450 69.3
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 4.2e-174 615.1 461 67.9
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.6e-173 613.2 470 67.0
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 6.1e-173 611.3 407 72.2
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 8.0e-173 610.9 431 70.8
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.4e-172 610.1 464 66.8
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 8.8e-172 607.4 462 65.8
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 7.5e-171 604.4 406 71.7
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 7.5e-171 604.4 463 66.1
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 9.8e-171 604.0 459 66.7
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 2.2e-170 602.8 427 68.4
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 2.8e-170 602.4 405 71.9
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 3.7e-170 602.1 465 65.4
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 8.3e-170 600.9 438 67.8
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 1.1e-169 600.5 433 70.0
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 4.1e-169 598.6 380 73.2
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 9.2e-169 597.4 435 68.0
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 1.2e-168 597.0 463 64.6
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 4.5e-168 595.1 424 67.5
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 7.7e-168 594.3 463 64.1
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 7.7e-168 594.3 463 64.1
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 5.0e-167 591.7 472 64.2
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 6.6e-167 591.3 438 68.0
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 6.6e-167 591.3 431 67.5
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 2.5e-166 589.3 432 68.8
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 2.1e-165 586.3 381 73.0
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 8.0e-165 584.3 381 72.7
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 1.0e-164 583.9 381 73.0
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 1.8e-164 583.2 381 73.0
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 2.0e-163 579.7 382 72.8
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 3.4e-163 578.9 451 66.5
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 5.7e-163 578.2 421 68.2
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 5.7e-163 578.2 433 68.4
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 9.8e-163 577.4 381 72.7
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.8e-161 573.2 463 63.1
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.8e-161 573.2 455 64.8
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 2.4e-161 572.8 456 62.9
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 1.2e-160 570.5 471 62.8
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 1.6e-160 570.1 393 70.5
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 7.8e-160 567.8 462 62.1
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 1.0e-159 567.4 469 62.7
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 1.0e-159 567.4 434 66.1
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 1.3e-159 567.0 474 61.0
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 5.0e-159 565.1 372 72.3
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 1.9e-158 563.1 491 61.5
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 4.3e-158 562.0 334 79.3
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 5.6e-158 561.6 421 65.8
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 5.6e-158 561.6 381 70.9
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 9.5e-158 560.8 435 64.6
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 3.6e-157 558.9 421 64.8
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 6.2e-157 558.1 428 65.0
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 8.0e-157 557.8 403 68.0
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.4e-156 557.0 393 72.0
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 2.2e-154 549.7 405 66.7
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 2.7e-152 542.7 335 74.6
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.6e-149 533.5 405 63.7
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 5.2e-148 528.5 476 57.8
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 1.2e-147 527.3 457 62.8
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 1.5e-147 526.9 362 66.9
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 2.6e-147 526.2 365 66.8
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 9.5e-142 507.7 408 63.0
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.1e-140 504.2 400 64.0
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 3.1e-140 502.7 393 63.1
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 4.1e-137 492.3 381 64.6
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 4.1e-137 492.3 318 72.0
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 3.6e-133 479.2 393 62.8
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 6.9e-132 474.9 430 57.2
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.4e-129 467.2 433 59.1
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 3.9e-127 459.1 424 56.8
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 2.5e-126 456.4 281 76.5
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.1e-124 451.1 430 56.7
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 7.9e-120 434.9 432 54.9
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 7.9e-120 434.9 355 57.7
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 1.8e-119 433.7 458 53.7
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.5e-115 420.6 421 56.3
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 5.8e-115 418.7 442 54.5
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 7.1e-113 411.8 342 62.9
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.3e-103 380.2 281 66.5
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 8.2e-93 345.1 209 77.5
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 1.0e-90 338.2 209 73.7
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 1.1e-89 334.7 373 45.8
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 1.1e-89 334.7 330 57.0
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 4.2e-89 332.8 357 48.7
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 2.6e-83 313.5 390 42.8
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 5.9e-83 312.4 274 59.9
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 1.1e-76 291.6 172 80.8
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 9.1e-76 288.5 276 48.6
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 7.7e-75 285.4 175 79.4
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 2.1e-72 277.3 224 62.9
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 3.6e-72 276.6 260 56.9
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 5.2e-71 272.7 224 62.5
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.6e-70 270.4 224 62.5
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 4.1e-68 263.1 210 62.4
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 4.8e-61 239.6 173 67.6
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 1.2e-54 218.4 296 41.2
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 4.4e-54 216.5 219 55.3
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 2.4e-44 184.1 237 46.0
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 4.1e-36 156.8 96 77.1
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.3e-33 147.1 224 42.9
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 1.2e-32 145.2 88 76.1
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 1.4e-28 131.7 124 54.8
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 1.7e-26 124.8 75 78.7
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 3.3e-25 120.6 160 45.0
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 2.8e-24 117.5 366 29.8
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 5.8e-22 109.8 130 46.9
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 2.2e-21 107.8 63 82.5
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.5e-17 95.1 69 65.2
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 2.0e-14 84.7 71 60.6
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 2.4e-12 77.8 63 58.7
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 4.2e-12 77.0 366 23.0
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 3.5e-11 73.9 81 43.2
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 4.0e-07 60.5 38 68.4
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 5.3e-07 60.1 49 65.3
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 1.5e-06 58.5 39 64.1
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 2.0e-06 58.2 47 55.3


User provided reference genes

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