Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G152200 Populus trichocarpa HOM05D007205 ORTHO05D009175 2.1e-197 692.2 354 100.0
Sabra13G0122300 Salix brachista HOM05D007205 ORTHO05D009175 2.5e-182 642.1 354 92.1
Manes.12G078600 Manihot esculenta HOM05D007205 ORTHO05D009175 3.1e-140 502.3 354 71.8
Gohir.A03G162500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 9.9e-115 417.5 354 59.9
Gorai.005G208100 Gossypium raimondii HOM05D007205 ORTHO05D009175 4.9e-114 415.2 354 59.9
Gohir.D02G185500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 6.4e-114 414.8 354 59.9
Atru.chr6.3107 Acer truncatum HOM05D007205 ORTHO05D009175 1.9e-113 413.3 343 60.6
Thecc.02G165600 Theobroma cacao HOM05D007205 ORTHO05D009175 1.3e-111 407.1 352 59.1
Prupe.3G223600 Prunus persica HOM05D007205 ORTHO05D009175 1.8e-111 406.8 355 58.3
TWI75G1301 Tripterygium wilfordii HOM05D007205 ORTHO05D009175 7.4e-110 401.4 356 59.0
Duzib132G1034 Durio zibethinus HOM05D007205 ORTHO05D009175 6.9e-108 394.8 351 58.4
CANSAT64G0219 Cannabis sativa HOM05D007205 ORTHO05D009175 1.3e-106 390.6 343 57.7
MD09G1127600 Malus domestica HOM05D007205 ORTHO05D009175 1.3e-106 390.6 347 57.9
TAR626G1876 Trochodendron aralioides HOM05D007205 ORTHO05D009175 2.2e-106 389.8 354 55.4
ClCG02G001450 Citrullus lanatus HOM05D007205 ORTHO05D009175 1.9e-105 386.7 361 56.2
Nn5g28818 Nelumbo nucifera HOM05D007205 ORTHO05D009175 2.5e-105 386.3 359 55.4
Cfa014480 Carpinus fangiana HOM05D007205 ORTHO05D009175 9.3e-105 384.4 346 58.1
Ciclev10018085m.g Citrus clementina HOM05D007205 ORTHO05D009175 4.6e-104 382.1 346 58.1
Haze_12995 Corylus avellana HOM05D007205 ORTHO05D009175 1.8e-103 380.2 349 58.2
MELO3C018783.2 Cucumis melo HOM05D007205 ORTHO05D009175 1.9e-102 376.7 364 53.8
Cpa.g.sc34.48 Carica papaya HOM05D007205 ORTHO05D009175 1.5e-99 367.1 353 56.4
COL.COLO4_13041 Corchorus olitorius HOM05D007205 ORTHO05D009175 8.5e-98 361.3 334 56.3
Hma1.2p1_0712F.1_g207580 Hydrangea macrophylla HOM05D007205 ORTHO05D009175 5.7e-94 348.6 366 51.6
Sed0009741 Sechium edule HOM05D007205 ORTHO05D009175 6.3e-93 345.1 360 52.5
Dinv18560 Davidia involucrata HOM05D007205 ORTHO05D009175 1.8e-92 343.6 356 51.4
CsaV3_7G003940 Cucumis sativus L. HOM05D007205 ORTHO05D009175 7.7e-91 338.2 316 54.1
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 8.8e-87 324.7 332 53.9
THA.LOC104826759 Tarenaya hassleriana HOM05D007205 ORTHO05D009175 8.8e-87 324.7 357 48.2
Ca_01558_v3 Cicer arietinum L. HOM05D007205 ORTHO05D009175 8.2e-85 318.2 349 48.4
Sc12g0002500 Simmondsia chinensis HOM05D007205 ORTHO05D009175 2.4e-84 316.6 351 48.7
Lj8P120T45 Lonicera japonica HOM05D007205 ORTHO05D009175 9.1e-84 314.7 312 52.9
Aa31sc535G20 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.0e-82 311.2 340 47.9
Rhsim06G0154800 Rhododendron simsii HOM05D007205 ORTHO05D009175 1.3e-82 310.8 352 46.3
Sp6g35950 Schrenkiella parvula HOM05D007205 ORTHO05D009175 1.3e-82 310.8 342 50.9
Aa31sc352G60 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.4e-81 307.4 340 47.6
Thhalv10015696m.g Eutrema salsugineum HOM05D007205 ORTHO05D009175 1.9e-81 307.0 342 49.7
BcaC02g10449 Brassica carinata HOM05D007205 ORTHO05D009175 5.5e-81 305.4 344 49.4
C04p28790 Brassica napus HOM05D007205 ORTHO05D009175 9.4e-81 304.7 344 49.4
Aa31sc1365G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.2e-80 304.3 338 47.3
Aa31sc352G30 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.2e-80 304.3 341 47.2
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 1.6e-80 303.9 306 51.6
Peaxi162Scf00007g00153 Petunia axillaris HOM05D007205 ORTHO05D009175 2.1e-80 303.5 343 49.3
Nitab4.5_0001134g0050 Nicotiana tabacum HOM05D007205 ORTHO05D009175 1.0e-79 301.2 322 51.6
A03p03030 Brassica napus HOM05D007205 ORTHO05D009175 2.3e-79 300.1 343 50.7
Aa31sc947G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 5.2e-79 298.9 337 47.8
BraA03t09662Z Brassica rapa HOM05D007205 ORTHO05D009175 5.2e-79 298.9 342 50.0
CAN.G86.36 Capsicum annuum HOM05D007205 ORTHO05D009175 1.1e-78 297.7 339 47.5
Aqoxy2G00583 Aquilegia oxysepala HOM05D007205 ORTHO05D009175 3.3e-78 296.2 367 46.6
Carub.0006s0584 Capsella rubella HOM05D007205 ORTHO05D009175 5.7e-78 295.4 344 50.0
Carub.0130s0001 Capsella rubella HOM05D007205 ORTHO05D009175 7.4e-78 295.0 344 49.7
BcaB01g02893 Brassica carinata HOM05D007205 ORTHO05D009175 9.7e-78 294.7 348 47.4
CARHR206230 Cardamine hirsuta HOM05D007205 ORTHO05D009175 2.2e-77 293.5 343 47.5
AT5G06920 Arabidopsis thaliana HOM05D007205 ORTHO05D009175 8.2e-77 291.6 347 49.0
Solyc07g053000.1 Solanum lycopersicum HOM05D007205 ORTHO05D009175 8.2e-77 291.6 348 46.0
arahy.Tifrunner.gnm1.ann1.G6KXX8 Arachis hypogaea HOM05D007205 ORTHO05D009175 1.4e-76 290.8 358 45.8
PGSC0003DMG400040434 Solanum tuberosum HOM05D007205 ORTHO05D009175 1.2e-75 287.7 324 47.2
AL6G17070 Arabidopsis lyrata HOM05D007205 ORTHO05D009175 1.6e-75 287.3 346 48.6
Psat5g266880 Pisum sativum HOM05D007205 ORTHO05D009175 1.6e-75 287.3 347 44.1
Sopen07g026550 Solanum pennellii HOM05D007205 ORTHO05D009175 2.6e-75 286.6 348 45.1
FAN14G2816 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.3e-74 284.3 360 44.4
FvH4_6g43900 Fragaria vesca HOM05D007205 ORTHO05D009175 1.7e-74 283.9 360 44.2
FAN09G0942 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.7e-74 283.9 359 44.8
Medtr2g089200 Medicago truncatula HOM05D007205 ORTHO05D009175 3.8e-74 282.7 349 43.0
Lj3g0018731 Lotus japonicus HOM05D007205 ORTHO05D009175 8.5e-74 281.6 352 45.5
TPR.G18059 Trifolium pratense HOM05D007205 ORTHO05D009175 8.5e-74 281.6 345 43.2
arahy.Tifrunner.gnm1.ann1.WFU09D Arachis hypogaea HOM05D007205 ORTHO05D009175 3.6e-72 276.2 348 45.4
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 3.6e-72 276.2 340 44.1
Glyma.13G304100 Glycine max HOM05D007205 ORTHO05D009175 1.0e-71 274.6 351 45.6
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 3.0e-71 273.1 320 45.6
SalBow2G2732 Salvia bowleyana HOM05D007205 ORTHO05D009175 4.0e-71 272.7 345 47.5
PGR042G1067 Punica granatum HOM05D007205 ORTHO05D009175 1.2e-70 271.2 366 42.9
RcHm_v2.0_Chr6g0278031 Rosa chinensis HOM05D007205 ORTHO05D009175 1.5e-70 270.8 292 51.4
SGA_v2.0_scaffold10G05347 Striga asiatica HOM05D007205 ORTHO05D009175 2.0e-70 270.4 349 45.6
Phvul.002G284500 Phaseolus vulgaris HOM05D007205 ORTHO05D009175 7.5e-70 268.5 356 43.8
Migut.F01128 Erythranthe guttata HOM05D007205 ORTHO05D009175 1.7e-69 267.3 346 45.1
VMungo0251G0055 Vigna mungo HOM05D007205 ORTHO05D009175 6.3e-69 265.4 361 43.8
Lalb_Chr24g0393611 Lupinus albus HOM05D007205 ORTHO05D009175 3.1e-68 263.1 356 43.3
PSO017G6138 Papaver somniferum HOM05D007205 ORTHO05D009175 5.3e-68 262.3 359 44.8
Oeu040642.1 Olea europaea HOM05D007205 ORTHO05D009175 7.0e-68 261.9 255 51.8
PSO675G8316 Papaver somniferum HOM05D007205 ORTHO05D009175 9.1e-68 261.5 360 45.3
Eucgr.A01741 Eucalyptus grandis HOM05D007205 ORTHO05D009175 2.7e-67 260.0 320 44.7
Lsat_1_v5_gn_3_42520 Lactuca sativa HOM05D007205 ORTHO05D009175 2.0e-62 243.8 351 38.5
ECA233G0199 Erigeron canadensis HOM05D007205 ORTHO05D009175 5.7e-62 242.3 306 41.2
HanXRQChr17g0564241 Helianthus annuus HOM05D007205 ORTHO05D009175 1.0e-58 231.5 348 38.2
HanXRQChr17g0542941 Helianthus annuus HOM05D007205 ORTHO05D009175 2.3e-58 230.3 300 40.0
Actinidia12481 Actinidia chinensis HOM05D007205 ORTHO05D009175 1.7e-53 214.2 351 36.8
FAN02G3251 Fragaria x ananassa HOM05D007205 ORTHO05D009175 3.1e-52 209.9 357 40.9
A03p67950 Brassica napus HOM05D007205 ORTHO05D009175 1.1e-49 201.4 240 44.6
BraA01t02676Z Brassica rapa HOM05D007205 ORTHO05D009175 1.1e-49 201.4 240 44.6
FAN05G5134 Fragaria x ananassa HOM05D007205 ORTHO05D009175 3.6e-48 196.4 353 37.1
FAN05G3426 Fragaria x ananassa HOM05D007205 ORTHO05D009175 5.0e-42 176.0 258 38.8
SEGI_15553 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 7.0e-36 155.6 338 30.5
unitig_0.g450 Utricularia gibba HOM05D007205 ORTHO05D009175 8.6e-34 148.7 231 39.4
SEGI_37477 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 1.1e-33 148.3 339 29.8
RcHm_v2.0_Chr2g0160671 Rosa chinensis HOM05D007205 ORTHO05D009175 3.3e-33 146.7 142 54.9
BcaB01g06014 Brassica carinata HOM05D007205 ORTHO05D009175 3.4e-30 136.7 262 39.7
Duzib168G1669 Durio zibethinus HOM05D007205 ORTHO05D009175 4.4e-30 136.3 154 48.7
RcHm_v2.0_Chr1g0324271 Rosa chinensis HOM05D007205 ORTHO05D009175 1.7e-29 134.4 151 51.0
RcHm_v2.0_Chr4g0411281 Rosa chinensis HOM05D007205 ORTHO05D009175 7.1e-28 129.0 151 49.7
SGA_v2.0_scaffold70G23481 Striga asiatica HOM05D007205 ORTHO05D009175 1.6e-24 117.9 177 40.1
BcaB01g05708 Brassica carinata HOM05D007205 ORTHO05D009175 6.2e-24 115.9 187 39.0
Aa31LG5G24200 Aethionema arabicum HOM05D007205 ORTHO05D009175 2.2e-21 107.5 121 45.5
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 1.4e-20 104.8 314 30.6
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 3.0e-18 97.1 323 28.8
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 3.6e-16 90.1 304 28.0
CAN.G86.39 Capsicum annuum HOM05D007205 ORTHO05D009175 2.4e-15 87.4 118 43.2
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 3.1e-15 87.0 314 27.7
Lalb_Chr21g0308511 Lupinus albus HOM05D002727 ORTHO05D002856 6.9e-15 85.9 337 27.0
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 9.0e-15 85.5 300 26.7
MD13G1028200 Malus domestica HOM05D002727 ORTHO05D002856 1.5e-14 84.7 312 27.9
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-14 84.0 313 26.2
QL02p071341 Quercus lobata HOM05D002727 ORTHO05D002856 2.6e-14 84.0 303 24.8
Nn1g09223 Nelumbo nucifera HOM05D010623 ORTHO05D012718 7.6e-14 82.4 313 25.9
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 1.7e-13 81.3 307 25.1
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.7e-13 81.3 306 25.2
MD16G1031100 Malus domestica HOM05D002727 ORTHO05D002856 2.2e-13 80.9 318 26.4
Prupe.1G322000 Prunus persica HOM05D002727 ORTHO05D002856 6.4e-13 79.3 314 26.4
CDE04G0093 Ceratophyllum demersum HOM05D002727 ORTHO05D002856 8.4e-13 79.0 325 24.3
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 8.4e-13 79.0 303 26.7
QL01p002288 Quercus lobata HOM05D002727 ORTHO05D002856 1.4e-12 78.2 310 25.5
Manes.17G103100 Manihot esculenta HOM05D002727 ORTHO05D002856 4.2e-12 76.6 296 26.4
Hma1.2p1_0951F.1_g240760 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 5.4e-12 76.3 305 24.3
Hma1.2p1_2764F.1_g328145 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 5.4e-12 76.3 305 24.3
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 5.4e-12 76.3 310 26.5
Haze_11036 Corylus avellana HOM05D002727 ORTHO05D002856 9.3e-12 75.5 307 24.1
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.3e-12 75.5 288 23.6
PSO017G6820 Papaver somniferum HOM05D002727 ORTHO05D002856 3.5e-11 73.6 304 27.0
PSO478G1911 Papaver somniferum HOM05D002727 ORTHO05D002856 3.5e-11 73.6 298 27.2
Sc18g0004340 Simmondsia chinensis HOM05D002727 ORTHO05D002856 3.5e-11 73.6 322 23.9
MD09G1010600 Malus domestica HOM05D002727 ORTHO05D002856 1.7e-10 71.2 312 27.6
C03p03430 Brassica napus HOM05D007205 ORTHO05D009175 2.3e-10 70.9 67 53.7
BolC3t12884H Brassica oleracea HOM05D007205 ORTHO05D009175 2.3e-10 70.9 67 53.7
Prupe.3G306500 Prunus persica HOM05D002727 ORTHO05D002856 2.3e-10 70.9 304 25.3
PSO478G1097 Papaver somniferum HOM05D002727 ORTHO05D002856 3.0e-10 70.5 306 26.5
vmacro10627 Vaccinium macrocarpon HOM05D002727 ORTHO05D002856 3.0e-10 70.5 344 23.3
CANSAT64G1895 Cannabis sativa HOM05D002727 ORTHO05D002856 5.1e-10 69.7 301 25.6
Atru.chr6.2573 Acer truncatum HOM05D002727 ORTHO05D002856 6.6e-10 69.3 301 25.9
RcHm_v2.0_Chr4g0440841 Rosa chinensis HOM05D002727 ORTHO05D002856 8.7e-10 68.9 302 27.2
Dinv43969 Davidia involucrata HOM05D010623 ORTHO05D012718 1.5e-09 68.2 274 21.9
Lsat_1_v5_gn_8_43200 Lactuca sativa HOM05D002727 ORTHO05D002856 1.9e-09 67.8 315 25.7
Sabra17G0092700 Salix brachista HOM05D002727 ORTHO05D002856 1.9e-09 67.8 297 27.3
SGA_v2.0_scaffold170G38831 Striga asiatica HOM05D002727 ORTHO05D002856 1.9e-09 67.8 343 25.4
FvH4_4g32150 Fragaria vesca HOM05D002727 ORTHO05D002856 7.3e-09 65.9 337 25.8
FAN07G1376 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.6e-09 65.5 304 26.6
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.3e-08 65.1 297 24.9
FAN12G1004 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.3e-08 65.1 337 25.8
FAN22G0940 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.3e-08 65.1 337 25.8
Nn3g19189 Nelumbo nucifera HOM05D010623 ORTHO05D012718 1.3e-08 65.1 321 22.4
SGA_v2.0_scaffold21G09432 Striga asiatica HOM05D049040 ORTHO05D009175 1.3e-08 65.1 84 44.0
Migut.E00413 Erythranthe guttata HOM05D002727 ORTHO05D002856 2.8e-08 63.9 311 25.7
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.8e-08 63.9 308 24.0
CsaV3_5G034890 Cucumis sativus L. HOM05D002727 ORTHO05D002856 4.0e-07 60.1 126 28.6
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 5.3e-07 59.7 119 27.7
Atru.chr11.374 Acer truncatum HOM05D002727 ORTHO05D002856 6.9e-07 59.3 271 22.9
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 6.9e-07 59.3 111 34.2
FvH4_7g12190 Fragaria vesca HOM05D002727 ORTHO05D002856 6.9e-07 59.3 302 22.8
Eucgr.G02206 Eucalyptus grandis HOM05D002727 ORTHO05D002856 1.2e-06 58.5 301 24.6
Ah.14g079100 Amaranthus hybridus HOM05D006072 ORTHO05D007363 1.5e-06 58.2 154 27.9
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 1.5e-06 58.2 115 27.8
MELO3C012299.2 Cucumis melo HOM05D002727 ORTHO05D002856 2.0e-06 57.8 126 27.8
HPP92_004203 Vanilla planifolia HOM05D006072 ORTHO05D007363 2.0e-06 57.8 133 30.8
Cpa.g.sc131.23 Carica papaya HOM05D006072 ORTHO05D007363 2.6e-06 57.4 141 29.1
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 2.6e-06 57.4 147 27.2
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 2.6e-06 57.4 125 29.6
Cpa.g.sc171.13 Carica papaya HOM05D002727 ORTHO05D002856 4.5e-06 56.6 125 32.0
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 5.8e-06 56.2 97 30.9
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 5.8e-06 56.2 97 30.9
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 5.8e-06 56.2 109 32.1
CiPaw.05G247600 Carya illinoinensis HOM05D002727 ORTHO05D002856 5.8e-06 56.2 161 24.8
C03p03420 Brassica napus HOM05D029148 ORTHO05D032464 7.6e-06 55.8 50 62.0
BolC3t12883H Brassica oleracea HOM05D029148 ORTHO05D032464 7.6e-06 55.8 50 62.0
PGR102G0802 Punica granatum HOM05D002727 ORTHO05D002856 7.6e-06 55.8 339 23.0
Solyc05g008320.1 Solanum lycopersicum HOM05D002727 ORTHO05D002856 7.6e-06 55.8 127 31.5
Sopen05g004150 Solanum pennellii HOM05D002727 ORTHO05D002856 7.6e-06 55.8 127 31.5
Eucgr.G02210 Eucalyptus grandis HOM05D002727 ORTHO05D002856 9.9e-06 55.5 303 23.4
Hma1.2p1_0523F.1_g172190 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 9.9e-06 55.5 129 30.2
PGSC0003DMG400030506 Solanum tuberosum HOM05D002727 ORTHO05D002856 9.9e-06 55.5 127 29.9


User provided reference genes

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