Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 3.7e-304 1047.3 514 100.0
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 9.2e-279 963.0 514 92.0
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 3.8e-232 808.1 516 77.3
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.4e-229 799.7 516 77.3
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 8.3e-195 684.1 516 66.5
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 1.3e-192 676.8 523 64.4
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 9.8e-188 660.6 524 63.5
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 7.3e-183 644.4 515 62.1
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 8.9e-181 637.5 516 63.0
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 3.4e-180 635.6 514 61.3
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 2.2e-179 632.9 510 61.2
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.2e-179 632.9 513 60.6
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.2e-179 632.9 513 60.6
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 2.9e-179 632.5 536 58.4
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 5.0e-176 621.7 513 59.8
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 8.6e-176 620.9 534 58.4
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 1.2e-174 617.1 539 58.3
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 5.4e-170 601.7 520 58.7
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 2.7e-169 599.4 548 56.0
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 2.7e-169 599.4 548 56.0
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.3e-168 597.0 519 57.8
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 9.5e-167 590.9 524 56.7
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 6.2e-166 588.2 554 54.5
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 1.8e-165 586.6 533 55.7
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 2.3e-165 586.3 522 56.9
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.2e-164 583.9 522 56.7
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.2e-164 583.9 541 55.3
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 2.2e-163 579.7 554 54.0
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.7e-163 578.9 533 55.7
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 4.9e-163 578.6 504 59.3
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 3.2e-162 575.9 524 55.5
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 3.2e-162 575.9 518 55.6
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 7.1e-162 574.7 521 56.4
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 1.6e-161 573.5 524 55.7
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 4.6e-161 572.0 506 57.1
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 4.6e-161 572.0 510 57.3
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 4.3e-159 565.5 532 55.6
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 9.6e-159 564.3 533 54.2
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 3.6e-158 562.4 523 55.1
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 3.6e-158 562.4 528 53.8
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.8e-157 560.1 551 53.5
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 2.4e-157 559.7 527 54.5
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 2.9e-155 552.7 509 55.6
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.9e-154 550.1 506 57.3
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.1e-153 546.6 526 53.2
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 2.1e-153 546.6 516 53.7
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 3.5e-153 545.8 513 54.6
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 1.7e-152 543.5 552 52.4
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 3.3e-151 539.3 519 54.1
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.3e-150 537.3 525 52.8
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.1e-149 534.3 541 52.3
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 1.8e-149 533.5 512 52.3
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 3.1e-149 532.7 512 52.3
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 4.0e-149 532.3 523 52.0
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 6.9e-149 531.6 520 53.1
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 2.0e-148 530.0 514 52.7
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 2.0e-148 530.0 513 53.0
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 3.4e-148 529.3 543 51.9
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 5.8e-148 528.5 539 51.9
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 1.3e-147 527.3 521 51.8
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 2.4e-146 523.1 536 52.1
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 4.2e-146 522.3 550 52.5
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 1.6e-145 520.4 517 52.4
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 4.6e-145 518.8 515 51.8
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 1.3e-144 517.3 545 50.6
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 5.1e-144 515.4 521 50.7
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 4.3e-143 512.3 522 51.5
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 4.3e-143 512.3 518 52.1
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.6e-142 510.4 524 50.6
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 1.8e-141 506.9 526 49.8
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 5.3e-141 505.4 523 52.0
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 9.0e-141 504.6 521 49.3
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 9.0e-141 504.6 519 49.7
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 1.2e-140 504.2 519 49.7
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.5e-140 503.8 542 50.9
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 5.8e-140 501.9 521 50.1
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 5.8e-140 501.9 520 50.8
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 5.8e-140 501.9 523 50.5
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 5.8e-140 501.9 526 48.1
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 2.2e-139 500.0 517 50.7
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.8e-139 499.2 477 53.9
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 4.9e-139 498.8 520 50.6
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 6.4e-139 498.4 524 51.5
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 1.1e-138 497.7 513 52.2
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 1.9e-138 496.9 535 50.5
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 9.3e-138 494.6 517 49.9
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 3.5e-137 492.7 522 50.8
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 2.3e-136 490.0 517 49.5
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 4.3e-135 485.7 528 47.5
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 1.6e-134 483.8 520 49.8
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 5.3e-133 478.8 538 48.3
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 6.5e-131 471.9 527 48.6
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.4e-130 470.7 506 51.2
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.1e-129 466.8 551 46.1
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 1.8e-128 463.8 500 48.2
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 1.5e-127 460.7 518 45.4
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 1.5e-127 460.7 516 46.5
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 4.3e-127 459.1 502 48.2
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 6.2e-126 455.3 566 44.5
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.1e-125 454.5 516 46.3
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 7.6e-124 448.4 554 44.9
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 6.3e-118 428.7 520 43.7
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 5.3e-117 425.6 527 42.5
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 5.9e-116 422.2 514 46.7
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 2.2e-115 420.2 515 44.7
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.4e-114 417.5 471 48.6
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.5e-114 415.6 497 45.1
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 2.7e-113 413.3 475 46.7
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 1.1e-111 407.9 532 44.0
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 4.8e-110 402.5 534 43.8
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 1.6e-105 387.5 408 50.0
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 5.1e-104 382.5 516 40.5
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 7.4e-103 378.6 522 42.7
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 2.2e-102 377.1 523 42.6
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.5e-100 369.4 497 41.9
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 5.5e-98 362.5 501 39.9
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 3.7e-94 349.7 558 38.5
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 6.3e-94 349.0 513 39.4
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 3.4e-87 326.6 479 39.7
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.5e-82 311.2 496 37.3
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.1e-81 307.4 519 38.0
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.1e-81 307.4 509 37.3
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.0e-80 305.1 509 37.3
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-72 276.9 469 36.7
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.8e-72 275.8 469 35.8
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 5.6e-66 256.1 519 33.3
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.5e-58 230.7 398 35.9
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.0e-56 223.4 465 34.6
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.0e-56 223.4 465 34.6
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.6e-49 201.4 254 44.9
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 6.2e-49 199.5 319 38.9
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.4e-45 188.3 396 33.3
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 3.2e-45 187.2 145 64.1
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 2.3e-43 181.0 98 88.8
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 8.6e-43 179.1 139 60.4
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 8.6e-43 179.1 530 28.9
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 6.8e-40 169.5 366 33.9
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.0e-39 167.9 525 26.1
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 5.4e-37 159.8 461 28.4
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.3e-33 148.7 495 25.7
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.8e-32 144.8 410 28.8
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 1.6e-28 131.7 489 26.6
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 4.6e-28 130.2 449 26.9
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 1.6e-25 121.7 57 91.2
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.6e-23 112.8 288 30.6
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 4.2e-21 107.1 441 22.2
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 7.1e-21 106.3 68 73.5
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 5.1e-19 100.1 506 22.3
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.8e-16 91.7 184 34.8
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 6.9e-16 89.7 379 23.0
Sabra13G0108800 Salix brachista HOM05D004790 ORTHO05D005678 9.0e-16 89.4 52 82.7
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 2.0e-15 88.2 58 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 7.4e-10 69.7 121 28.9
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.4e-10 69.7 81 42.0
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 2.4e-08 64.7 88 45.5
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 4.5e-07 60.5 45 51.1
Dinv07568 Davidia involucrata HOM05D032653 ORTHO05D182718 6.5e-06 56.6 235 25.1
Dinv17313 Davidia involucrata HOM05D032653 ORTHO05D185244 6.5e-06 56.6 235 25.1


User provided reference genes

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