Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 1.1e-58 229.9 130 100.0
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 1.5e-28 129.8 131 64.9
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 1.1e-26 123.6 128 55.5
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 1.1e-26 123.6 132 53.8
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 7.1e-26 120.9 132 59.1
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 1.2e-25 120.2 130 60.8
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 1.6e-25 119.8 128 61.7
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 1.0e-24 117.1 132 62.9
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 1.3e-24 116.7 129 56.6
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 1.5e-23 113.2 129 55.8
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 3.6e-22 108.6 132 58.3
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 1.8e-21 106.3 130 56.9
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 1.8e-21 106.3 128 53.9
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 1.5e-20 103.2 133 54.9
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 2.6e-20 102.4 133 54.1
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 2.6e-20 102.4 133 54.1
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 2.6e-20 102.4 132 56.8
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 1.3e-19 100.1 133 53.4
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 1.3e-19 100.1 130 57.7
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 1.3e-19 100.1 132 58.3
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 2.2e-19 99.4 129 56.6
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 2.4e-18 95.9 131 51.9
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 5.4e-18 94.7 142 51.4
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 9.2e-18 94.0 112 58.0
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 9.2e-18 94.0 127 59.1
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 1.6e-17 93.2 128 51.6
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 2.7e-17 92.4 133 53.4
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 3.5e-17 92.0 120 55.0
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 2.3e-16 89.4 121 52.9
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 3.0e-16 89.0 131 52.7
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 3.0e-16 89.0 129 53.5
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 5.1e-16 88.2 125 55.2
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 5.1e-16 88.2 127 50.4
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 8.7e-16 87.4 122 53.3
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 1.5e-15 86.7 134 54.5
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 4.3e-15 85.1 133 51.1
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 5.6e-15 84.7 134 55.2
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 9.6e-15 84.0 129 48.8
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 1.3e-14 83.6 130 50.8
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 2.1e-14 82.8 115 54.8
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 2.8e-14 82.4 135 50.4
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 1.4e-13 80.1 117 49.6
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 1.8e-13 79.7 136 39.7
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 3.1e-13 79.0 138 42.0
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 3.1e-13 79.0 130 44.6
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 6.9e-13 77.8 139 40.3
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 9.0e-13 77.4 87 56.3
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 1.2e-12 77.0 135 42.2
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 2.6e-12 75.9 150 49.3
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 3.4e-12 75.5 120 48.3
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 7.6e-12 74.3 108 47.2
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 7.6e-12 74.3 124 49.2
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 7.6e-12 74.3 142 46.5
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 9.9e-12 73.9 131 45.8
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 9.9e-12 73.9 131 46.6
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 9.9e-12 73.9 115 50.4
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 1.7e-11 73.2 136 48.5
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 1.7e-11 73.2 131 51.9
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 2.9e-11 72.4 133 46.6
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 2.9e-11 72.4 147 47.6
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 2.9e-11 72.4 88 61.4
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 2.9e-11 72.4 133 45.9
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 3.8e-11 72.0 133 51.9
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 1.1e-10 70.5 125 49.6
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 2.4e-10 69.3 133 46.6
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 2.4e-10 69.3 143 44.8
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 3.2e-10 68.9 125 49.6
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 1.2e-09 67.0 145 46.2
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 2.7e-09 65.9 73 54.8
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 2.7e-09 65.9 119 44.5
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 3.5e-09 65.5 82 59.8
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 4.6e-09 65.1 129 45.7
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 7.8e-09 64.3 133 47.4
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 7.8e-09 64.3 83 60.2
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 7.8e-09 64.3 114 40.4
Actinidia11440 Actinidia chinensis HOM05D007607 ORTHO05D009603 1.0e-08 63.9 124 42.7
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 1.3e-08 63.5 127 44.9
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 1.3e-08 63.5 127 44.9
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 1.3e-08 63.5 83 59.0
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 1.3e-08 63.5 129 46.5
Medtr4g087540 Medicago truncatula HOM05D007607 ORTHO05D009603 1.7e-08 63.2 90 56.7
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 2.3e-08 62.8 137 46.0
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 3.0e-08 62.4 82 58.5
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 3.0e-08 62.4 82 58.5
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 3.0e-08 62.4 129 43.4
Phvul.003G059800 Phaseolus vulgaris HOM05D007607 ORTHO05D009603 3.9e-08 62.0 78 59.0
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 5.1e-08 61.6 73 61.6
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 6.6e-08 61.2 129 44.2
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 8.7e-08 60.8 77 58.4
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 8.7e-08 60.8 129 45.7
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 1.1e-07 60.5 79 59.5
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 1.1e-07 60.5 128 46.1
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 1.1e-07 60.5 40 77.5
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 1.5e-07 60.1 78 61.5
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 1.9e-07 59.7 127 44.1
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 5.6e-07 58.2 71 57.7
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 7.3e-07 57.8 134 44.0
Nn7g37525 Nelumbo nucifera HOM05D007607 ORTHO05D009603 2.1e-06 56.2 62 67.7


User provided reference genes

Program Settings