Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G128001 Populus trichocarpa HOM05D005323 ORTHO05D006820 4.5e-64 247.7 116 100.0
CiPaw.02G099700 Carya illinoinensis HOM05D005323 ORTHO05D006820 3.4e-48 194.9 108 84.3
VMungo1383G1964 Vigna mungo HOM05D005323 ORTHO05D006820 5.9e-48 194.1 108 82.4
arahy.Tifrunner.gnm1.ann1.157ZG7 Arachis hypogaea HOM05D005323 ORTHO05D006820 1.7e-47 192.6 108 82.4
arahy.Tifrunner.gnm1.ann1.353MUE Arachis hypogaea HOM05D005323 ORTHO05D006820 1.7e-47 192.6 108 82.4
Lalb_Chr14g0364721 Lupinus albus HOM05D005323 ORTHO05D006820 1.7e-47 192.6 108 82.4
Lj1g0017737 Lotus japonicus HOM05D005323 ORTHO05D006820 2.2e-47 192.2 108 82.4
Eucgr.L00010 Eucalyptus grandis HOM05D005323 ORTHO05D006820 3.8e-47 191.4 108 83.3
Glyma.16G037700 Glycine max HOM05D005323 ORTHO05D006820 3.8e-47 191.4 108 81.5
Actinidia27124 Actinidia chinensis HOM05D005323 ORTHO05D006820 5.0e-47 191.0 108 81.5
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 5.0e-47 191.0 108 81.5
Rhsim09G0008200 Rhododendron simsii HOM05D005323 ORTHO05D006820 6.5e-47 190.7 108 82.4
CiPaw.01G169200 Carya illinoinensis HOM05D005323 ORTHO05D006820 1.1e-46 189.9 108 82.4
Dinv18320 Davidia involucrata HOM05D005323 ORTHO05D006820 1.4e-46 189.5 108 81.5
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 5.5e-46 187.6 108 82.4
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 5.5e-46 187.6 108 80.6
EL10Ac4g07922 Beta vulgaris HOM05D005323 ORTHO05D006820 7.2e-46 187.2 108 81.5
Psat6g090360 Pisum sativum HOM05D005323 ORTHO05D006820 7.2e-46 187.2 108 80.6
AUR62031624 Chenopodium quinoa HOM05D005323 ORTHO05D006820 9.4e-46 186.8 108 80.6
AUR62020514 Chenopodium quinoa HOM05D005323 ORTHO05D006820 7.9e-45 183.7 105 81.0
ATR0743G149 Amborella trichopoda HOM05D005323 ORTHO05D006820 1.8e-44 182.6 108 78.7
Hma1.2p1_1156F.1_g262335 Hydrangea macrophylla HOM05D005323 ORTHO05D006820 3.0e-44 181.8 106 79.2
Hma1.2p1_1156F.1_g262340 Hydrangea macrophylla HOM05D005323 ORTHO05D006820 3.0e-44 181.8 106 79.2
Psat4g031880 Pisum sativum HOM05D005323 ORTHO05D006820 3.0e-44 181.8 105 79.0
HPP92_028318 Vanilla planifolia HOM05D005323 ORTHO05D006820 2.0e-43 179.1 108 76.9
Manes.01G016900 Manihot esculenta HOM05D005323 ORTHO05D006820 4.3e-43 177.9 108 78.7
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 1.7e-42 176.0 108 76.9
Nitab4.5_0000285g0060 Nicotiana tabacum HOM05D005323 ORTHO05D006820 8.2e-42 173.7 108 75.9
Nitab4.5_0002913g0040 Nicotiana tabacum HOM05D005323 ORTHO05D006820 8.2e-42 173.7 108 75.9
MELO3C011851.2 Cucumis melo HOM05D005323 ORTHO05D006820 6.9e-41 170.6 108 76.9
CsaV3_5G030120 Cucumis sativus L. HOM05D005323 ORTHO05D006820 6.9e-41 170.6 108 76.9
Sed0013916 Sechium edule HOM05D005323 ORTHO05D006820 6.9e-41 170.6 108 76.9
CSS0020323 Camellia sinensis var. sinensis HOM05D005323 ORTHO05D006820 9.1e-41 170.2 108 75.0
Migut.N03056 Erythranthe guttata HOM05D005323 ORTHO05D006820 9.1e-41 170.2 108 74.1
Migut.O00692 Erythranthe guttata HOM05D005323 ORTHO05D006820 9.1e-41 170.2 108 74.1
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 1.2e-40 169.9 108 74.1
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 1.5e-40 169.5 108 75.0
Sopen03g013260 Solanum pennellii HOM05D005323 ORTHO05D006820 2.0e-40 169.1 108 75.9
PGSC0003DMG400026328 Solanum tuberosum HOM05D005323 ORTHO05D006820 2.0e-40 169.1 108 75.9
Cfa015676 Carpinus fangiana HOM05D005323 ORTHO05D006820 2.6e-40 168.7 108 75.9
Haze_00854 Corylus avellana HOM05D005323 ORTHO05D006820 2.6e-40 168.7 108 75.9
Ca_08300_v3 Cicer arietinum L. HOM05D005323 ORTHO05D006820 3.4e-40 168.3 108 75.0
Phvul.001G114300 Phaseolus vulgaris HOM05D005323 ORTHO05D006820 7.7e-40 167.2 108 73.1
QL10p057057 Quercus lobata HOM05D005323 ORTHO05D006820 7.7e-40 167.2 108 74.1
BcaB02g07449 Brassica carinata HOM05D005323 ORTHO05D006820 1.3e-39 166.4 108 72.2
CBR_g4366 Chara braunii HOM05D005323 ORTHO05D006820 1.3e-39 166.4 108 72.2
SGA_v2.0_scaffold19G08852 Striga asiatica HOM05D005323 ORTHO05D006820 1.7e-39 166.0 108 69.4
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 3.8e-39 164.9 108 71.3
Aqoxy4G03253 Aquilegia oxysepala HOM05D005323 ORTHO05D006820 5.0e-39 164.5 108 73.1
Sc16g0006150 Simmondsia chinensis HOM05D005323 ORTHO05D006820 1.1e-38 163.3 108 71.3
Medtr7g086360 Medicago truncatula HOM05D005323 ORTHO05D006820 3.2e-38 161.8 108 71.3
Sp5g03440 Schrenkiella parvula HOM05D005323 ORTHO05D006820 4.2e-38 161.4 108 72.2
Sabra19G0107500 Salix brachista HOM05D005323 ORTHO05D006820 5.5e-38 161.0 108 74.1
A07p24790 Brassica napus HOM05D005323 ORTHO05D006820 7.2e-38 160.6 108 70.4
BraA07t30124Z Brassica rapa HOM05D005323 ORTHO05D006820 7.2e-38 160.6 108 70.4
PGR042G1263 Punica granatum HOM05D005323 ORTHO05D006820 1.2e-37 159.8 108 71.3
Dinv33215 Davidia involucrata HOM05D005323 ORTHO05D006820 1.6e-37 159.5 108 70.4
Sabra19G0108600 Salix brachista HOM05D005323 ORTHO05D006820 1.6e-37 159.5 108 74.1
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 2.1e-37 159.1 108 71.3
PSO675G7169 Papaver somniferum HOM05D005323 ORTHO05D006820 4.7e-37 157.9 108 70.4
BcaC08g45003 Brassica carinata HOM05D005323 ORTHO05D006820 7.9e-37 157.1 108 69.4
C06p26380 Brassica napus HOM05D005323 ORTHO05D006820 7.9e-37 157.1 108 69.4
Lj6P177T10 Lonicera japonica HOM05D005323 ORTHO05D006820 3.9e-36 154.8 108 69.4
MSTRG.22040 Avicennia marina HOM05D005323 ORTHO05D006820 1.1e-35 153.3 108 67.6
HanXRQChr01g0001231 Helianthus annuus HOM05D005323 ORTHO05D006820 1.5e-35 152.9 108 68.5
ECA240G0264 Erigeron canadensis HOM05D005323 ORTHO05D006820 2.0e-35 152.5 108 67.6
Psat0s4033g0160 Pisum sativum HOM05D005323 ORTHO05D006820 2.0e-35 152.5 108 71.3
Oeu015708.1 Olea europaea HOM05D005323 ORTHO05D006820 3.3e-35 151.8 108 66.7
TAR362G1141 Trochodendron aralioides HOM05D005323 ORTHO05D006820 5.7e-35 151.0 108 68.5
SalBow6G4087 Salvia bowleyana HOM05D005323 ORTHO05D006820 7.4e-35 150.6 108 66.7
TPR.G17865 Trifolium pratense HOM05D005323 ORTHO05D006820 2.2e-34 149.1 108 66.7
unitig_22.g5706 Utricularia gibba HOM05D005323 ORTHO05D006820 3.7e-34 148.3 108 64.8
AagrBONN_evm.TU.Sc2ySwM_228.3872 Anthoceros agrestis HOM05D005323 ORTHO05D006820 4.8e-34 147.9 108 65.7
Potri.019G096900 Populus trichocarpa HOM05D005323 ORTHO05D006820 4.8e-34 147.9 108 69.4
Cc11_g02260 Coffea canephora HOM05D005323 ORTHO05D006820 1.1e-33 146.7 108 66.7
Pp3c6_28640 Physcomitrium patens HOM05D005323 ORTHO05D006820 2.4e-33 145.6 108 64.8
Cpa.g.sc17.20 Carica papaya HOM05D005323 ORTHO05D006820 1.5e-32 142.9 108 66.7
Gohir.A10G144900 Gossypium hirsutum HOM05D005323 ORTHO05D006820 2.0e-32 142.5 108 66.7
Gohir.D10G122100 Gossypium hirsutum HOM05D005323 ORTHO05D006820 2.0e-32 142.5 108 66.7
Gorai.011G134300 Gossypium raimondii HOM05D005323 ORTHO05D006820 2.0e-32 142.5 108 66.7
Glyma.19G114900 Glycine max HOM05D005323 ORTHO05D006820 4.5e-32 141.4 108 63.0
COL.COLO4_38123 Corchorus olitorius HOM05D005323 ORTHO05D006820 1.3e-31 139.8 108 64.8
Pp3c5_3050 Physcomitrium patens HOM05D005323 ORTHO05D006820 5.0e-31 137.9 108 61.1
CANSAT56G3038 Cannabis sativa HOM05D005323 ORTHO05D006820 6.5e-31 137.5 108 63.9
Ciclev10020927m.g Citrus clementina HOM05D005323 ORTHO05D006820 6.5e-31 137.5 108 63.0
Duzib151G0361 Durio zibethinus HOM05D005323 ORTHO05D006820 6.5e-31 137.5 108 64.8
CARHR138940 Cardamine hirsuta HOM05D005323 ORTHO05D006820 8.5e-31 137.1 108 63.0
DCAR_005453 Daucus carota HOM05D005323 ORTHO05D006820 8.5e-31 137.1 108 62.0
Thecc.04G163800 Theobroma cacao HOM05D005323 ORTHO05D006820 1.5e-30 136.3 108 63.0
Atru.chr4.1467 Acer truncatum HOM05D005323 ORTHO05D006820 2.5e-30 135.6 108 62.0
Atru.chr4.1493 Acer truncatum HOM05D005323 ORTHO05D006820 2.5e-30 135.6 108 62.0
Duzib212G0476 Durio zibethinus HOM05D005323 ORTHO05D006820 2.5e-30 135.6 108 62.0
THA.LOC104804129 Tarenaya hassleriana HOM05D005323 ORTHO05D006820 3.2e-30 135.2 108 62.0
Prupe.1G071000 Prunus persica HOM05D005323 ORTHO05D006820 4.2e-30 134.8 108 63.9
Lsat_1_v5_gn_0_9241 Lactuca sativa HOM05D005323 ORTHO05D006820 7.2e-30 134.0 108 62.0
Solyc03g059100.3 Solanum lycopersicum HOM05D005323 ORTHO05D006820 9.4e-30 133.7 89 71.9
Gorai.005G008900 Gossypium raimondii HOM05D005323 ORTHO05D006820 2.1e-29 132.5 111 63.1
FAN07G1750 Fragaria x ananassa HOM05D005323 ORTHO05D006820 3.6e-29 131.7 108 62.0
FAN22G1090 Fragaria x ananassa HOM05D005323 ORTHO05D006820 3.6e-29 131.7 108 62.0
RcHm_v2.0_Chr4g0405641 Rosa chinensis HOM05D005323 ORTHO05D006820 3.6e-29 131.7 108 62.0
MD16G1243600 Malus domestica HOM05D005323 ORTHO05D006820 4.7e-29 131.3 108 63.0
FvH4_4g10290 Fragaria vesca HOM05D005323 ORTHO05D006820 6.1e-29 131.0 108 61.1
FAN12G3690 Fragaria x ananassa HOM05D005323 ORTHO05D006820 6.1e-29 131.0 108 61.1
FAN12G3871 Fragaria x ananassa HOM05D005323 ORTHO05D006820 6.1e-29 131.0 108 61.1
FAN17G0326 Fragaria x ananassa HOM05D005323 ORTHO05D006820 1.4e-28 129.8 108 61.1
Os06g0653800 Oryza sativa ssp. japonica HOM05D005323 ORTHO05D006820 1.4e-28 129.8 108 58.3
Zm00001eb274960 Zea mays HOM05D005323 ORTHO05D006820 1.4e-28 129.8 108 58.3
Zm00001eb389600 Zea mays HOM05D005323 ORTHO05D006820 3.9e-28 128.3 108 57.4
TWI15G0703 Tripterygium wilfordii HOM05D005323 ORTHO05D006820 8.8e-28 127.1 108 59.3
Cre06.g255400 Chlamydomonas reinhardtii HOM05D005323 ORTHO05D006820 1.3e-26 123.2 113 48.7
AL4G42640 Arabidopsis lyrata HOM05D005323 ORTHO05D006820 1.7e-26 122.9 108 57.4
Sp4g25840 Schrenkiella parvula HOM05D005323 ORTHO05D006820 4.8e-26 121.3 108 57.4
TWI63G1046 Tripterygium wilfordii HOM05D005323 ORTHO05D006820 2.4e-25 119.0 108 56.5
AT2G43770 Arabidopsis thaliana HOM05D005323 ORTHO05D006820 3.1e-25 118.6 108 56.5
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 4.1e-25 118.2 108 55.6
Thhalv10001531m.g Eutrema salsugineum HOM05D005323 ORTHO05D006820 4.1e-25 118.2 108 55.6
Thhalv10006086m.g Eutrema salsugineum HOM05D005323 ORTHO05D006820 4.1e-25 118.2 108 57.4
Oeu050326.1 Olea europaea HOM05D005323 ORTHO05D006820 4.1e-25 118.2 108 55.6
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 7.0e-25 117.5 108 55.6
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 7.0e-25 117.5 108 55.6
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 7.0e-25 117.5 108 55.6
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 7.0e-25 117.5 108 55.6
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 1.6e-24 116.3 108 54.6
Carub.0004s2630 Capsella rubella HOM05D005323 ORTHO05D006820 4.5e-24 114.8 108 53.7
QL10p056998 Quercus lobata HOM05D005323 ORTHO05D006820 4.5e-24 114.8 109 57.8
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 4.7e-21 104.8 108 50.9
GSVIVG01038180001 Vitis vinifera HOM05D005323 ORTHO05D006820 4.4e-19 98.2 58 79.3
Cfa023113 Carpinus fangiana HOM05D005323 ORTHO05D017328 2.9e-15 85.5 109 38.5
Haze_27161 Corylus avellana HOM05D005323 ORTHO05D006820 3.6e-13 78.6 108 35.2
MCO10G164 Micromonas commoda HOM05D005323 ORTHO05D006820 6.1e-13 77.8 109 38.5
DCAR_011058 Daucus carota HOM05D005323 ORTHO05D033416 1.3e-07 60.1 43 65.1
DCAR_018378 Daucus carota HOM05D002999 ORTHO05D003137 5.5e-06 54.7 91 33.0


User provided reference genes

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