Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.9e-113 412.1 223 100.0
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 5.8e-61 238.4 187 66.8
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 6.4e-60 235.0 223 59.2
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 1.2e-58 230.7 144 87.5
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 3.5e-58 229.2 164 73.2
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.3e-57 226.5 198 61.1
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.9e-57 225.7 200 61.0
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 3.9e-57 225.7 172 67.4
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.5e-56 223.8 227 57.7
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 7.4e-56 221.5 201 60.7
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 7.4e-56 221.5 172 65.1
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 2.1e-55 219.9 195 61.0
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 3.7e-55 219.2 154 71.4
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 4.8e-55 218.8 186 61.8
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.4e-54 216.5 156 69.2
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 3.1e-54 216.1 155 69.0
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.1e-54 216.1 225 56.9
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 9.0e-54 214.5 155 69.0
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 1.5e-53 213.8 160 66.9
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.0e-53 213.4 153 66.7
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 3.4e-53 212.6 153 68.6
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 7.6e-53 211.5 196 58.2
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 1.7e-52 210.3 196 57.7
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 6.4e-52 208.4 187 61.5
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 6.4e-52 208.4 170 63.5
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.1e-51 207.6 146 68.5
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.4e-51 207.2 153 64.7
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.4e-51 207.2 218 58.3
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.4e-51 206.5 221 55.2
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 2.4e-51 206.5 156 64.1
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 9.3e-51 204.5 221 54.3
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 1.0e-49 201.1 228 52.2
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 1.8e-49 200.3 223 49.3
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 3.0e-49 199.5 156 66.0
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 3.0e-49 199.5 154 61.7
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 1.5e-48 197.2 152 61.8
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 1.9e-48 196.8 155 65.8
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 2.5e-48 196.4 153 65.4
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 2.5e-48 196.4 162 59.3
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 4.3e-48 195.7 180 57.8
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 9.6e-48 194.5 152 61.8
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 3.7e-47 192.6 221 50.7
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.8e-47 192.2 155 63.2
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.1e-46 191.0 155 63.9
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 2.6e-45 186.4 150 58.0
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.6e-45 186.4 220 52.7
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 4.5e-45 185.7 154 62.3
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 5.8e-45 185.3 220 53.2
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 8.4e-44 181.4 157 59.2
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 3.2e-43 179.5 162 56.8
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.6e-42 177.2 154 63.0
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 2.1e-42 176.8 154 62.3
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 6.0e-42 175.3 169 51.5
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 3.9e-41 172.6 155 60.0
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.5e-40 169.9 158 55.7
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 5.7e-40 168.7 179 49.7
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 1.3e-39 167.5 179 50.8
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 1.3e-39 167.5 220 45.5
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 1.6e-39 167.2 156 55.1
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 2.8e-39 166.4 126 67.5
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.7e-39 166.0 156 60.9
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 4.1e-38 162.5 220 44.5
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 2.6e-37 159.8 187 48.1
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.7e-36 157.1 233 42.1
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 1.9e-35 153.7 125 62.4
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 1.0e-33 147.9 137 59.1
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 2.3e-33 146.7 93 77.4
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 1.7e-31 140.6 111 57.7
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 2.2e-31 140.2 159 46.5
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 2.4e-30 136.7 157 47.8
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 4.5e-29 132.5 117 54.7
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 5.9e-29 132.1 133 48.9
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 5.9e-29 132.1 135 52.6
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 7.7e-29 131.7 138 46.4
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 7.7e-29 131.7 80 82.5
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 1.1e-27 127.9 144 46.5
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 1.4e-27 127.5 160 45.0
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 1.1e-24 117.9 102 60.8
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 7.4e-24 115.2 150 39.3
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 1.1e-22 111.3 124 43.5
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.4e-22 110.9 142 40.8
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 1.4e-22 110.9 102 57.8
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.8e-22 110.5 185 36.2
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.1e-22 109.8 122 42.6
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.1e-22 109.8 122 42.6
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 5.3e-22 109.0 117 44.4
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 7.0e-22 108.6 124 41.9
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 7.0e-22 108.6 181 35.9
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 7.0e-22 108.6 97 53.6
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 7.0e-22 108.6 154 37.7
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 9.1e-22 108.2 145 42.8
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 9.1e-22 108.2 107 57.9
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 9.1e-22 108.2 124 41.9
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.2e-21 107.8 149 36.9
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 1.5e-21 107.5 152 38.2
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 2.0e-21 107.1 157 35.0
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 2.0e-21 107.1 122 40.2
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 2.6e-21 106.7 122 41.0
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.6e-21 106.7 152 40.1
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 2.6e-21 106.7 120 43.3
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 3.4e-21 106.3 118 43.2
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 4.5e-21 105.9 125 40.8
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 4.5e-21 105.9 117 44.4
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 4.5e-21 105.9 162 36.4
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 5.9e-21 105.5 154 37.0
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 7.7e-21 105.1 117 41.9
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.0e-20 104.8 181 36.5
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.0e-20 104.8 129 41.9
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.0e-20 104.8 130 39.2
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.0e-20 104.8 130 39.2
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 1.3e-20 104.4 120 40.0
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.7e-20 104.0 116 42.2
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.7e-20 104.0 141 37.6
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.7e-20 104.0 117 42.7
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 1.7e-20 104.0 159 36.5
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.7e-20 104.0 158 36.7
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.7e-20 104.0 96 61.5
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 2.2e-20 103.6 174 36.8
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.9e-20 103.2 107 56.1
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.8e-20 102.8 159 36.5
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 3.8e-20 102.8 141 38.3
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 5.0e-20 102.4 187 33.2
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 6.5e-20 102.1 122 40.2
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 8.5e-20 101.7 124 37.9
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 8.5e-20 101.7 175 34.3
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 8.5e-20 101.7 126 40.5
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.1e-19 101.3 171 32.2
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.4e-19 100.9 186 31.2
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.4e-19 100.9 186 31.7
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.9e-19 100.5 120 41.7
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 2.5e-19 100.1 151 36.4
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 2.5e-19 100.1 125 40.8
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 2.5e-19 100.1 125 40.8
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 5.5e-19 99.0 155 34.2
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 7.2e-19 98.6 155 34.2
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 9.4e-19 98.2 180 34.4
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.2e-18 97.8 181 30.9
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.6e-18 97.4 118 39.0
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 2.1e-18 97.1 115 39.1
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 2.7e-18 96.7 132 37.9
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 3.6e-18 96.3 121 38.8
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 4.7e-18 95.9 67 74.6
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 4.7e-18 95.9 67 74.6
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 4.7e-18 95.9 131 38.9
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 6.1e-18 95.5 134 38.1
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 6.1e-18 95.5 105 53.3
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 6.1e-18 95.5 129 35.7
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 1.4e-17 94.4 171 33.9
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.8e-17 94.0 122 38.5
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.3e-17 93.6 206 31.6
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 3.9e-17 92.8 135 34.1
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 5.2e-17 92.4 137 35.0
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 1.5e-16 90.9 91 48.4
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 3.3e-16 89.7 161 31.7
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 4.4e-16 89.4 151 33.1
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 4.4e-16 89.4 122 37.7
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 9.7e-16 88.2 161 32.9
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.3e-15 87.8 183 31.7
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 3.1e-14 83.2 120 35.0
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.6e-13 80.9 215 28.8
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 3.5e-13 79.7 132 33.3
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.9e-13 79.0 173 32.9
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 5.5e-11 72.4 177 26.0
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 1.3e-07 61.2 84 39.3
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.2e-07 60.5 73 39.7
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.8e-07 60.1 72 41.7


User provided reference genes

Program Settings