Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.2e-112 409.8 211 100.0
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 1.3e-101 373.2 211 92.4
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 3.9e-66 255.4 206 65.0
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.1e-65 253.8 207 64.7
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.1e-60 237.3 205 61.0
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 2.4e-60 236.1 208 65.4
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 9.3e-60 234.2 208 63.0
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 9.3e-60 234.2 207 62.3
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.2e-59 233.8 208 64.9
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.0e-58 230.7 209 61.2
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 3.9e-58 228.8 205 62.9
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.5e-57 226.9 198 62.6
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 4.3e-57 225.3 223 55.2
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.3e-56 223.8 210 59.5
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 4.8e-56 221.9 187 66.3
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.8e-56 221.9 211 61.1
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.8e-56 221.9 211 61.1
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 2.4e-55 219.5 208 60.6
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.2e-54 217.2 205 55.6
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 3.4e-54 215.7 208 57.7
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.8e-53 212.2 196 59.7
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 4.9e-53 211.8 206 55.8
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 6.5e-53 211.5 205 58.0
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.6e-51 206.8 202 57.4
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 1.6e-51 206.8 206 57.3
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 2.7e-51 206.1 218 56.4
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 3.5e-51 205.7 206 55.3
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 4.6e-51 205.3 211 58.8
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 1.8e-50 203.4 228 54.8
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 2.3e-50 203.0 204 55.9
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 8.7e-50 201.1 205 54.6
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 3.3e-49 199.1 147 71.4
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.3e-48 197.2 218 53.7
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.3e-48 197.2 205 55.1
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 1.6e-48 196.8 137 70.8
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 4.8e-48 195.3 179 60.9
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 6.2e-48 194.9 277 47.7
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 2.4e-47 193.0 219 53.4
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.3e-45 187.2 157 63.1
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.3e-45 187.2 194 54.6
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.9e-45 186.0 191 57.1
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.9e-44 183.3 158 59.5
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 3.2e-44 182.6 157 62.4
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 9.3e-44 181.0 288 43.1
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 3.5e-43 179.1 206 50.5
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.6e-43 178.7 186 55.9
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 7.9e-43 177.9 181 53.6
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 1.3e-42 177.2 189 54.0
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.3e-42 176.4 188 55.9
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 3.0e-42 176.0 152 62.5
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 5.1e-42 175.3 170 52.9
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 6.7e-42 174.9 178 56.7
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 1.5e-41 173.7 156 59.0
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 3.3e-41 172.6 151 60.9
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 5.7e-41 171.8 148 62.8
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 1.6e-40 170.2 178 53.9
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 1.6e-40 170.2 179 56.4
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 2.2e-40 169.9 179 55.9
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 2.2e-40 169.9 226 47.3
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 4.8e-40 168.7 151 60.3
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 6.3e-40 168.3 127 66.1
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.1e-39 167.5 153 60.8
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 2.4e-39 166.4 172 54.7
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 5.3e-39 165.2 149 57.7
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 1.5e-38 163.7 210 50.0
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 3.4e-38 162.5 134 59.7
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 1.0e-37 161.0 127 62.2
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.9e-37 159.5 208 47.1
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 5.0e-37 158.7 211 42.2
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.4e-36 157.1 201 46.3
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 2.5e-36 156.4 211 41.7
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 6.1e-35 151.8 156 54.5
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 7.9e-35 151.4 146 59.6
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 1.5e-33 147.1 174 47.1
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.0e-33 146.7 209 46.9
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.2e-32 143.3 209 42.6
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 2.8e-32 142.9 90 77.8
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 3.4e-30 136.0 141 51.1
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 9.7e-25 117.9 133 52.6
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 2.4e-23 113.2 151 38.4
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 3.1e-23 112.8 207 29.5
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.1e-23 112.8 125 52.0
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 3.1e-23 112.8 155 38.1
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 7.0e-23 111.7 151 35.8
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 9.1e-23 111.3 125 51.2
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.2e-22 110.9 154 37.7
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.2e-22 110.9 74 75.7
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.2e-22 110.9 158 37.3
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.6e-22 109.8 155 36.8
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 2.6e-22 109.8 147 38.8
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 3.5e-22 109.4 128 41.4
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 3.5e-22 109.4 155 36.8
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 4.5e-22 109.0 151 36.4
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 5.9e-22 108.6 157 37.6
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 5.9e-22 108.6 155 36.8
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 7.7e-22 108.2 156 35.3
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 7.7e-22 108.2 179 34.1
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 7.7e-22 108.2 178 34.3
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 1.0e-21 107.8 154 37.0
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.0e-21 107.8 153 33.3
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 1.3e-21 107.5 189 33.9
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 2.2e-21 106.7 123 37.4
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 2.2e-21 106.7 152 34.9
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 2.2e-21 106.7 171 35.1
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.9e-21 106.3 128 41.4
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.9e-21 106.3 154 37.0
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.9e-21 106.3 162 35.2
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 3.8e-21 105.9 156 37.2
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.8e-21 105.9 163 35.0
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 5.0e-21 105.5 124 35.5
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 5.0e-21 105.5 158 36.7
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 5.0e-21 105.5 141 37.6
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 6.5e-21 105.1 205 31.7
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 6.5e-21 105.1 162 34.6
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 1.1e-20 104.4 178 32.0
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 1.1e-20 104.4 154 39.6
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 1.5e-20 104.0 121 40.5
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.5e-20 104.0 163 35.6
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.9e-20 103.6 147 36.1
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 2.5e-20 103.2 160 35.6
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 2.5e-20 103.2 156 36.5
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 3.2e-20 102.8 118 42.4
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.2e-20 102.4 153 35.3
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 5.5e-20 102.1 155 34.8
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 7.2e-20 101.7 146 33.6
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 7.2e-20 101.7 191 31.9
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 7.2e-20 101.7 150 37.3
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 7.2e-20 101.7 160 33.8
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 9.4e-20 101.3 153 37.3
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 1.4e-18 97.4 152 34.9
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 1.8e-18 97.1 143 37.1
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 2.3e-18 96.7 152 34.2
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 4.0e-18 95.9 172 31.4
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 5.2e-18 95.5 125 35.2
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 5.2e-18 95.5 148 33.8
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 6.7e-18 95.1 153 35.3
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 8.8e-18 94.7 147 36.1
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 8.8e-18 94.7 131 42.0
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 8.8e-18 94.7 157 35.0
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 4.4e-17 92.4 148 31.1
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 5.7e-17 92.0 170 29.4
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 1.3e-16 90.9 147 35.4
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 1.3e-16 90.9 137 46.7
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 2.2e-16 90.1 182 34.1
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 2.8e-16 89.7 130 43.1
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 4.8e-16 89.0 202 29.7
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 8.2e-16 88.2 110 37.3
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.1e-15 87.8 122 37.7
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 2.4e-15 86.7 111 38.7
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 7.0e-15 85.1 77 58.4
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 2.0e-14 83.6 138 35.5
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 2.6e-14 83.2 210 29.5
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 4.5e-14 82.4 115 35.7
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 1.0e-13 81.3 91 40.7
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.0e-13 81.3 123 36.6
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 2.5e-12 76.6 157 33.8
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 3.2e-12 76.3 153 32.7
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 9.4e-12 74.7 83 51.8
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.4e-10 70.9 156 28.8
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 3.0e-10 69.7 143 32.2
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.2e-09 67.8 77 41.6
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 1.3e-08 64.3 40 77.5
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 1.3e-08 64.3 157 29.9
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 1.1e-07 61.2 193 31.6
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 7.0e-07 58.5 65 44.6


User provided reference genes

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