Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G121201 Populus trichocarpa HOM05D007319 ORTHO05D008576 6.5e-34 146.7 70 100.0
Sabra13G0120700 Salix brachista HOM05D007319 ORTHO05D008576 4.6e-32 140.6 69 95.7
Potri.013G149650 Populus trichocarpa HOM05D007319 ORTHO05D008576 1.8e-31 138.7 69 94.2
Thecc.02G167300 Theobroma cacao HOM05D007319 ORTHO05D008576 4.2e-25 117.5 67 79.1
QL08p036137 Quercus lobata HOM05D007319 ORTHO05D008576 7.2e-25 116.7 65 80.0
CiPaw.04G121400 Carya illinoinensis HOM05D007319 ORTHO05D008576 1.2e-24 115.9 69 75.4
Duzib132G0482 Durio zibethinus HOM05D007319 ORTHO05D008576 2.1e-24 115.2 67 77.6
CANSAT64G1375 Cannabis sativa HOM05D007319 ORTHO05D008576 2.7e-24 114.8 65 76.9
Haze_13028 Corylus avellana HOM05D007319 ORTHO05D008576 3.6e-24 114.4 66 77.3
PGR042G3383 Punica granatum HOM05D007319 ORTHO05D008576 3.6e-24 114.4 67 76.1
TWI18G1078 Tripterygium wilfordii HOM05D007319 ORTHO05D008576 3.6e-24 114.4 66 75.8
MELO3C018779.2 Cucumis melo HOM05D007319 ORTHO05D008576 4.7e-24 114.0 67 74.6
Cfa014494 Carpinus fangiana HOM05D007319 ORTHO05D008576 6.1e-24 113.6 67 77.6
Gohir.A11G222102 Gossypium hirsutum HOM05D007319 ORTHO05D008576 6.1e-24 113.6 67 76.1
Lalb_Chr03g0029021 Lupinus albus HOM05D007319 ORTHO05D008576 6.1e-24 113.6 67 74.6
Cpa.g.sc17.7 Carica papaya HOM05D007319 ORTHO05D008576 1.0e-23 112.8 67 73.1
Gohir.D11G230600 Gossypium hirsutum HOM05D007319 ORTHO05D008576 1.4e-23 112.5 67 74.6
Gorai.003G066900 Gossypium raimondii HOM05D007319 ORTHO05D008576 1.4e-23 112.5 67 74.6
GSVIVG01000444001 Vitis vinifera HOM05D007319 ORTHO05D008576 1.4e-23 112.5 67 74.6
Manes.13G087700 Manihot esculenta HOM05D007319 ORTHO05D008576 2.3e-23 111.7 69 69.6
Atru.chr6.3094 Acer truncatum HOM05D007319 ORTHO05D008576 3.0e-23 111.3 67 76.1
ClCG02G001500 Citrullus lanatus HOM05D007319 ORTHO05D008576 3.9e-23 110.9 67 71.6
Ciclev10015114m.g Citrus clementina HOM05D007319 ORTHO05D008576 3.9e-23 110.9 67 73.1
COL.COLO4_13062 Corchorus olitorius HOM05D007319 ORTHO05D008576 5.1e-23 110.5 67 73.1
CsaV3_7G004000 Cucumis sativus L. HOM05D007319 ORTHO05D008576 5.1e-23 110.5 67 71.6
Sed0019912 Sechium edule HOM05D007319 ORTHO05D008576 5.1e-23 110.5 67 71.6
Medtr0280s0030 Medicago truncatula HOM05D007319 ORTHO05D008576 8.8e-23 109.8 65 73.8
Actinidia30494 Actinidia chinensis HOM05D007319 ORTHO05D008576 1.5e-22 109.0 67 70.1
EL10Ac9g20722 Beta vulgaris HOM05D007319 ORTHO05D008576 1.5e-22 109.0 67 70.1
CAN.G640.27 Capsicum annuum HOM05D007319 ORTHO05D008576 1.5e-22 109.0 67 68.7
Eucgr.A01754 Eucalyptus grandis HOM05D007319 ORTHO05D008576 1.5e-22 109.0 67 71.6
Sopen07g026770 Solanum pennellii HOM05D007319 ORTHO05D008576 1.5e-22 109.0 67 68.7
Medtr1g052840 Medicago truncatula HOM05D007319 ORTHO05D008576 2.0e-22 108.6 65 72.3
SalBow1G4158 Salvia bowleyana HOM05D007319 ORTHO05D008576 2.0e-22 108.6 67 71.6
SalBow1G6686 Salvia bowleyana HOM05D007319 ORTHO05D008576 2.0e-22 108.6 67 71.6
Ah.01g014450 Amaranthus hybridus HOM05D007319 ORTHO05D008576 2.6e-22 108.2 67 70.1
AUR62033721 Chenopodium quinoa HOM05D007319 ORTHO05D008576 2.6e-22 108.2 67 70.1
Atru.chr6.3563 Acer truncatum HOM05D007319 ORTHO05D008576 3.3e-22 107.8 67 76.1
MBI02_g03610_MAGBIO Magnolia biondii HOM05D007319 ORTHO05D008576 3.3e-22 107.8 66 72.7
Solyc07g053210.3 Solanum lycopersicum HOM05D007319 ORTHO05D008576 3.3e-22 107.8 67 68.7
Ca_08326_v3 Cicer arietinum L. HOM05D007319 ORTHO05D008576 4.4e-22 107.5 69 73.9
Lj3g0006033 Lotus japonicus HOM05D007319 ORTHO05D008576 4.4e-22 107.5 69 72.5
Nn1g06835 Nelumbo nucifera HOM05D003350 ORTHO05D008576 7.4e-22 106.7 67 67.2
Migut.H01008 Erythranthe guttata HOM05D007319 ORTHO05D008576 9.7e-22 106.3 67 70.1
AUR62025153 Chenopodium quinoa HOM05D007319 ORTHO05D008576 1.3e-21 105.9 67 68.7
Psat7g202760 Pisum sativum HOM05D007319 ORTHO05D008576 1.3e-21 105.9 67 68.7
Cc05_g05710 Coffea canephora HOM05D007319 ORTHO05D008576 1.7e-21 105.5 67 71.6
Lj3g0020364 Lotus japonicus HOM05D007319 ORTHO05D008576 1.7e-21 105.5 69 71.0
PGSC0003DMG400026178 Solanum tuberosum HOM05D007319 ORTHO05D008576 1.7e-21 105.5 67 65.7
TAR626G1179 Trochodendron aralioides HOM05D007319 ORTHO05D008576 1.7e-21 105.5 67 67.2
Lj1A744T30 Lonicera japonica HOM05D007319 ORTHO05D008576 2.2e-21 105.1 67 64.2
Hma1.2p1_1090F.1_g255770 Hydrangea macrophylla HOM05D007319 ORTHO05D008576 2.8e-21 104.8 67 67.2
Rhsim04G0059100 Rhododendron simsii HOM05D007319 ORTHO05D008576 2.8e-21 104.8 67 65.7
MSTRG.14170 Avicennia marina HOM05D007319 ORTHO05D008576 3.7e-21 104.4 67 68.7
Peaxi162Scf00007g01823 Petunia axillaris HOM05D007319 ORTHO05D008576 4.8e-21 104.0 67 65.7
Phvul.011G109000 Phaseolus vulgaris HOM05D007319 ORTHO05D008576 4.8e-21 104.0 65 72.3
RhsimUnG0197400 Rhododendron simsii HOM05D007319 ORTHO05D008576 4.8e-21 104.0 67 65.7
CARHR027000 Cardamine hirsuta HOM05D007319 ORTHO05D008576 6.3e-21 103.6 67 65.7
Nitab4.5_0000945g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000689 6.3e-21 103.6 67 64.2
Dinv13851 Davidia involucrata HOM05D007319 ORTHO05D008576 8.2e-21 103.2 67 65.7
Thhalv10001995m.g Eutrema salsugineum HOM05D007319 ORTHO05D008576 8.2e-21 103.2 67 68.7
Ah.01g005180 Amaranthus hybridus HOM05D007319 ORTHO05D008576 1.1e-20 102.8 67 68.7
Hund01202 Selenicereus undatus HOM05D007319 ORTHO05D008576 1.1e-20 102.8 67 65.7
SGA_v2.0_scaffold49G18317 Striga asiatica HOM05D007319 ORTHO05D008576 1.1e-20 102.8 67 68.7
AL1G40820 Arabidopsis lyrata HOM05D007319 ORTHO05D008576 1.8e-20 102.1 68 66.2
DCAR_021209 Daucus carota HOM05D007319 ORTHO05D008576 1.8e-20 102.1 66 65.2
Glyma.12G104000 Glycine max HOM05D007319 ORTHO05D008576 1.8e-20 102.1 65 70.8
Lsat_1_v5_gn_3_41840 Lactuca sativa HOM05D007319 ORTHO05D008576 1.8e-20 102.1 67 67.2
ECA246G0686 Erigeron canadensis HOM05D000038 ORTHO05D000689 5.3e-20 100.5 67 64.2
unitig_26.g9934 Utricularia gibba HOM05D002278 ORTHO05D008576 5.3e-20 100.5 67 67.2
CSS0043355 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 9.1e-20 99.8 67 64.2
Nitab4.5_0010290g0020 Nicotiana tabacum HOM05D007319 ORTHO05D008576 9.1e-20 99.8 67 61.2
AT1G27410 Arabidopsis thaliana HOM05D007319 ORTHO05D008576 1.2e-19 99.4 67 65.7
Carub.0001s2595 Capsella rubella HOM05D007319 ORTHO05D008576 1.2e-19 99.4 67 65.7
A07p00250 Brassica napus HOM05D007319 ORTHO05D008576 1.5e-19 99.0 67 65.7
BraA07t27817Z Brassica rapa HOM05D007319 ORTHO05D008576 1.5e-19 99.0 67 65.7
CDE11G1185 Ceratophyllum demersum HOM05D003350 ORTHO05D008576 1.5e-19 99.0 67 64.2
Sp3g33700 Schrenkiella parvula HOM05D007319 ORTHO05D008576 1.5e-19 99.0 67 65.7
arahy.Tifrunner.gnm1.ann1.74LKV9 Arachis hypogaea HOM05D007319 ORTHO05D008576 2.6e-19 98.2 67 64.2
BcaB03g16844 Brassica carinata HOM05D007319 ORTHO05D008576 2.6e-19 98.2 67 65.7
THA.LOC104816143 Tarenaya hassleriana HOM05D007319 ORTHO05D008576 2.6e-19 98.2 67 65.7
ATR1132G134 Amborella trichopoda HOM05D003350 ORTHO05D008576 3.4e-19 97.8 66 63.6
CSS0048621 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 4.5e-19 97.4 67 62.7
Hma1.2p1_3430F.1_g336010 Hydrangea macrophylla HOM05D007319 ORTHO05D008576 5.9e-19 97.1 67 65.7
vmacro09306 Vaccinium macrocarpon HOM05D007319 ORTHO05D008576 5.9e-19 97.1 63 66.7
Aqoxy3G01438 Aquilegia oxysepala HOM05D003350 ORTHO05D008576 1.0e-18 96.3 65 63.1
PSO541G2656 Papaver somniferum HOM05D007319 ORTHO05D008576 1.0e-18 96.3 67 58.2
arahy.Tifrunner.gnm1.ann1.RET3PJ Arachis hypogaea HOM05D007319 ORTHO05D008576 1.3e-18 95.9 67 62.7
CSS0021958 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 2.2e-18 95.1 67 59.7
CSS0049465 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 2.2e-18 95.1 67 62.7
HanXRQChr17g0543141 Helianthus annuus HOM05D007319 ORTHO05D008576 2.9e-18 94.7 67 58.2
CSS0000364 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 1.4e-17 92.4 69 63.8
C07p00530 Brassica napus HOM05D007319 ORTHO05D008576 2.7e-16 88.2 67 62.7
MBI02_g10998_MAGBIO Magnolia biondii HOM05D003350 ORTHO05D008576 8.0e-16 86.7 51 70.6
Zm00001eb369790 Zea mays HOM05D007319 ORTHO05D008576 8.0e-16 86.7 65 61.5
Os01g0783400 Oryza sativa ssp. japonica HOM05D007319 ORTHO05D008576 2.3e-15 85.1 65 60.0
SMO144G0017 Selaginella moellendorffii HOM05D003350 ORTHO05D008576 8.2e-13 76.6 60 55.0
BcaC06g36738 Brassica carinata HOM05D007319 ORTHO05D008576 5.0e-10 67.4 44 63.6
SMO118G0039 Selaginella moellendorffii HOM05D003350 ORTHO05D008576 6.7e-07 57.0 37 59.5
Aa31LG2G5880 Aethionema arabicum HOM05D003350 ORTHO05D003947 1.5e-06 55.8 48 52.1
C07p35700 Brassica napus HOM05D003350 ORTHO05D003947 2.0e-06 55.5 67 40.3
BcaC06g31050 Brassica carinata HOM05D003350 ORTHO05D003947 2.6e-06 55.1 67 40.3
BolC7t44091H Brassica oleracea HOM05D003350 ORTHO05D003947 2.6e-06 55.1 67 40.3
Carub.0005s0468 Capsella rubella HOM05D003350 ORTHO05D003947 2.6e-06 55.1 67 41.8
CARHR147690 Cardamine hirsuta HOM05D003350 ORTHO05D003947 2.6e-06 55.1 67 40.3
Cre06.g278177 Chlamydomonas reinhardtii HOM05D001934 ORTHO05D002139 2.6e-06 55.1 50 48.0
Sp2g15800 Schrenkiella parvula HOM05D003350 ORTHO05D003947 2.6e-06 55.1 67 40.3
A06p41820 Brassica napus HOM05D003350 ORTHO05D003947 3.3e-06 54.7 67 40.3
BraA06t27101Z Brassica rapa HOM05D003350 ORTHO05D003947 3.3e-06 54.7 67 40.3
BraA07t30983Z Brassica rapa HOM05D001934 ORTHO05D002139 3.3e-06 54.7 41 53.7
Cpa.g.sc70.40 Carica papaya HOM05D003350 ORTHO05D003947 3.3e-06 54.7 53 50.9
Thhalv10004102m.g Eutrema salsugineum HOM05D003350 ORTHO05D003947 3.3e-06 54.7 67 40.3
Pp3c5_18670 Physcomitrium patens HOM05D003350 ORTHO05D003947 3.3e-06 54.7 48 47.9
BcaC08g46141 Brassica carinata HOM05D001934 ORTHO05D002139 4.4e-06 54.3 45 53.3
BolC6t39091H Brassica oleracea HOM05D001934 ORTHO05D002139 4.4e-06 54.3 45 53.3
AL5G15520 Arabidopsis lyrata HOM05D003350 ORTHO05D003947 5.7e-06 53.9 48 50.0
AT3G26680 Arabidopsis thaliana HOM05D003350 ORTHO05D003947 5.7e-06 53.9 48 50.0
CAN.G473.164 Capsicum annuum HOM05D003350 ORTHO05D003947 5.7e-06 53.9 48 50.0
Haze_14983 Corylus avellana HOM05D003350 ORTHO05D003947 5.7e-06 53.9 67 40.3
COL.COLO4_13399 Corchorus olitorius HOM05D003350 ORTHO05D003947 7.5e-06 53.5 48 50.0
COL.COLO4_32907 Corchorus olitorius HOM05D003350 ORTHO05D003947 7.5e-06 53.5 48 50.0
Glyma.16G045700 Glycine max HOM05D003350 ORTHO05D003947 7.5e-06 53.5 50 46.0
Lalb_Chr24g0402941 Lupinus albus HOM05D003350 ORTHO05D003947 7.5e-06 53.5 52 46.2
PGSC0003DMG400020189 Solanum tuberosum HOM05D003350 ORTHO05D003947 7.5e-06 53.5 48 50.0
Aqoxy3G03985 Aquilegia oxysepala HOM05D001934 ORTHO05D002139 9.7e-06 53.1 46 54.3
EL10Ac2g04516 Beta vulgaris HOM05D001934 ORTHO05D002139 9.7e-06 53.1 46 50.0
C06p40110 Brassica napus HOM05D001934 ORTHO05D002139 9.7e-06 53.1 37 56.8
Cfa024079 Carpinus fangiana HOM05D003350 ORTHO05D003947 9.7e-06 53.1 49 51.0
Manes.02G072600 Manihot esculenta HOM05D001934 ORTHO05D002139 9.7e-06 53.1 47 53.2
Sabra04G0063400 Salix brachista HOM05D001934 ORTHO05D002139 9.7e-06 53.1 69 44.9
TWI53G1329 Tripterygium wilfordii HOM05D003350 ORTHO05D003947 9.7e-06 53.1 48 54.2


User provided reference genes

Program Settings