Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 0.0e+00 1402.1 765 100.0
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 0.0e+00 1135.6 782 79.8
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 0.0e+00 1077.0 806 75.1
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 7.5e-262 907.5 600 86.3
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 3.3e-209 732.6 771 58.0
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 8.8e-178 628.2 786 52.8
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.2e-169 601.3 774 51.6
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 7.5e-169 598.6 774 51.4
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.2e-168 597.0 774 51.3
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.7e-165 587.4 780 52.7
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 6.3e-160 568.9 789 48.9
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.1e-159 568.2 773 49.5
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 1.9e-156 557.4 751 50.2
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 8.9e-154 548.5 782 48.1
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 8.3e-152 542.0 680 51.2
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 1.4e-151 541.2 801 47.1
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 1.1e-148 531.6 767 48.5
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 6.1e-147 525.8 681 48.8
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 8.0e-147 525.4 803 44.0
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 6.8e-146 522.3 888 42.9
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 4.4e-145 519.6 630 50.8
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 7.5e-145 518.8 883 43.3
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 4.1e-143 513.1 741 47.4
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 3.9e-141 506.5 795 44.0
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 5.0e-141 506.1 669 48.0
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.4e-138 498.0 656 47.9
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 2.3e-138 497.3 817 44.4
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 3.4e-137 493.4 605 51.9
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 9.8e-137 491.9 754 45.9
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 1.5e-132 478.0 802 45.5
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 2.8e-131 473.8 871 42.0
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 2.8e-131 473.8 790 44.1
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 5.2e-130 469.5 819 44.0
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.6e-129 467.2 830 41.8
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 3.4e-129 466.8 670 44.0
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 4.4e-129 466.5 810 44.0
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 3.5e-126 456.8 799 44.1
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 1.3e-125 454.9 819 42.5
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 5.1e-125 453.0 761 44.2
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 5.1e-125 453.0 785 43.3
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 6.6e-125 452.6 800 42.1
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 8.6e-125 452.2 792 44.3
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.5e-124 450.7 765 42.1
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 5.6e-124 449.5 811 40.9
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 3.6e-123 446.8 796 43.8
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 8.1e-123 445.7 780 43.5
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.2e-121 441.8 869 38.2
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.2e-121 441.8 796 42.0
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 4.4e-121 439.9 802 42.6
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 5.8e-121 439.5 843 40.2
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 7.6e-121 439.1 795 42.1
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.7e-120 438.0 674 45.3
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 1.4e-119 434.9 680 45.1
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 2.4e-119 434.1 820 40.6
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 5.4e-119 433.0 804 41.5
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 1.6e-118 431.4 861 40.8
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.7e-118 430.6 791 38.7
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 2.3e-117 427.6 742 40.8
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 1.6e-115 421.4 811 40.3
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 1.6e-115 421.4 674 43.9
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 8.1e-115 419.1 822 39.9
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.1e-114 418.7 684 41.8
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 1.5e-113 414.8 677 41.8
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 3.4e-113 413.7 773 39.8
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 2.9e-112 410.6 673 41.8
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 3.2e-111 407.1 799 38.5
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 7.1e-111 406.0 972 36.2
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 9.3e-111 405.6 783 38.2
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 9.3e-111 405.6 833 38.7
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 3.5e-110 403.7 779 40.7
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 6.0e-110 402.9 791 36.5
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.0e-109 402.1 772 40.5
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 3.6e-107 393.7 652 40.3
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 3.8e-104 383.6 655 39.4
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.9e-103 381.3 676 39.6
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.2e-103 380.6 652 41.0
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 4.2e-103 380.2 807 39.7
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.6e-102 378.3 836 38.3
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.6e-102 376.7 580 42.8
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 6.0e-102 376.3 664 40.2
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 6.7e-101 372.9 791 36.2
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.6e-99 368.2 687 38.7
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 2.8e-99 367.5 684 37.1
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 3.1e-98 364.0 662 41.2
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 5.3e-98 363.2 667 37.0
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 9.0e-98 362.5 649 39.1
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 5.8e-97 359.8 812 37.2
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 7.6e-97 359.4 812 37.2
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 1.3e-96 358.6 812 37.1
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.7e-96 358.2 750 34.5
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 2.9e-96 357.5 770 38.1
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 6.4e-96 356.3 817 37.1
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.1e-95 355.5 663 41.0
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 4.6e-94 350.1 898 33.1
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 7.9e-94 349.4 726 35.3
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.0e-93 349.0 761 36.4
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 1.1e-92 345.5 692 35.4
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.5e-92 345.1 797 38.4
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 6.9e-90 336.3 715 35.7
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 9.0e-90 335.9 655 39.2
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 5.7e-84 316.6 643 40.1
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 6.3e-83 313.2 658 35.3
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.1e-82 312.4 679 36.7
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.4e-82 312.0 805 33.5
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 6.9e-82 309.7 801 34.1
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 1.2e-81 308.9 817 32.4
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 2.5e-76 291.2 683 34.4
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 1.1e-74 285.8 862 31.3
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 5.3e-74 283.5 751 36.1
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 6.5e-72 276.6 964 30.6
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.8e-69 268.5 308 53.6
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 1.7e-67 261.9 151 89.4
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 3.5e-65 254.2 279 53.4
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 5.9e-65 253.4 699 34.2
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.9e-63 248.4 622 33.1
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 5.5e-63 246.9 383 47.8
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 6.7e-61 240.0 655 29.0
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 2.8e-59 234.6 654 30.7
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 3.5e-57 227.6 437 44.9
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.1e-50 204.5 265 49.4
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.0e-45 189.5 175 53.1
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.5e-44 185.7 682 29.0
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 2.4e-42 178.3 413 41.6
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 1.5e-39 169.1 223 39.9
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 4.7e-38 164.1 372 37.6
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.1e-34 151.0 169 46.2
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 4.1e-34 151.0 133 56.4
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 1.7e-32 145.6 251 47.4
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 3.1e-29 134.8 779 24.6
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.1e-23 116.3 498 27.9
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 1.6e-22 112.5 297 29.3
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 6.4e-19 100.5 390 30.5
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 5.4e-18 97.4 505 27.5
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 9.2e-18 96.7 216 32.4
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 1.9e-15 89.0 76 63.2
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 4.3e-15 87.8 137 38.7
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 1.2e-12 79.7 75 62.7
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 2.6e-12 78.6 238 29.4
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 2.5e-07 62.0 62 51.6
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 4.3e-07 61.2 62 51.6
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.6e-06 59.3 88 43.2
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 6.2e-06 57.4 64 48.4


User provided reference genes

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