Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G119100 Populus trichocarpa HOM05D017147 ORTHO05D011251 1.7e-38 162.2 80 100.0
Potri.019G091100 Populus trichocarpa HOM05D017147 ORTHO05D011251 1.3e-25 119.4 80 76.2
Sabra13G0100500 Salix brachista HOM05D017147 ORTHO05D011251 1.4e-21 105.9 61 77.0
Cfa014706 Carpinus fangiana HOM05D017147 ORTHO05D011251 2.2e-14 82.0 81 54.3
Haze_13332 Corylus avellana HOM05D017147 ORTHO05D011251 1.5e-13 79.3 81 54.3
Haze_13334 Corylus avellana HOM05D017147 ORTHO05D011251 1.5e-13 79.3 81 54.3
TAR629G1463 Trochodendron aralioides HOM05D010626 ORTHO05D012901 1.6e-12 75.9 80 55.0
TAR629G3489 Trochodendron aralioides HOM05D010626 ORTHO05D012901 1.0e-11 73.2 80 53.8
Ciclev10017647m.g Citrus clementina HOM05D009623 ORTHO05D011251 8.8e-11 70.1 84 46.4
Prupe.3G124600 Prunus persica HOM05D017147 ORTHO05D011251 5.7e-10 67.4 82 51.2
Sp4g13550 Schrenkiella parvula HOM05D009623 ORTHO05D011251 5.7e-10 67.4 82 42.7
Thhalv10017782m.g Eutrema salsugineum HOM05D009623 ORTHO05D011251 1.3e-09 66.2 82 42.7
Manes.13G138500 Manihot esculenta HOM05D009623 ORTHO05D011251 1.7e-09 65.9 83 51.8
AL4G26240 Arabidopsis lyrata HOM05D009623 ORTHO05D011251 2.8e-09 65.1 82 41.5
AT2G31081 Arabidopsis thaliana HOM05D009623 ORTHO05D011251 3.7e-09 64.7 82 42.7
AL1G16210 Arabidopsis lyrata HOM05D009623 ORTHO05D011251 4.8e-09 64.3 84 44.0
Nn1g00060 Nelumbo nucifera HOM05D010626 ORTHO05D012901 6.3e-09 63.9 79 44.3
Nn1g09010 Nelumbo nucifera HOM05D010626 ORTHO05D012901 6.3e-09 63.9 79 44.3
BraA10t42755Z Brassica rapa HOM05D009623 ORTHO05D011251 8.2e-09 63.5 84 40.5
BcaB06g28408 Brassica carinata HOM05D009623 ORTHO05D011251 1.1e-08 63.2 79 41.8
Aa31LG5G5840 Aethionema arabicum HOM05D009623 ORTHO05D011251 1.4e-08 62.8 84 44.0
BcaB02g06813 Brassica carinata HOM05D009623 ORTHO05D011251 1.4e-08 62.8 84 41.7
BolC5t29225H Brassica oleracea HOM05D009623 ORTHO05D011251 3.1e-08 61.6 84 40.5
AT1G06225 Arabidopsis thaliana HOM05D009623 ORTHO05D011251 4.1e-08 61.2 84 42.9
BcaC05g24293 Brassica carinata HOM05D009623 ORTHO05D011251 4.1e-08 61.2 84 39.3
A10p04840 Brassica napus HOM05D009623 ORTHO05D011251 4.1e-08 61.2 84 38.1
C05p04540 Brassica napus HOM05D009623 ORTHO05D011251 4.1e-08 61.2 84 39.3
A04p23810 Brassica napus HOM05D009623 ORTHO05D011251 5.3e-08 60.8 79 40.5
CiPaw.03G185300 Carya illinoinensis HOM05D017147 ORTHO05D011251 9.1e-08 60.1 71 45.1
BraA04t17906Z Brassica rapa HOM05D009623 ORTHO05D011251 1.2e-07 59.7 79 39.2
Carub.0004s1231 Capsella rubella HOM05D009623 ORTHO05D011251 1.2e-07 59.7 82 41.5
Nn1g04342 Nelumbo nucifera HOM05D010626 ORTHO05D012901 2.7e-07 58.5 79 38.0
BcaB06g28482 Brassica carinata HOM05D009623 ORTHO05D011251 3.5e-07 58.2 79 39.2
C04p60300 Brassica napus HOM05D009623 ORTHO05D011251 3.5e-07 58.2 79 39.2
BolC4t27531H Brassica oleracea HOM05D009623 ORTHO05D011251 3.5e-07 58.2 79 39.2
Glyma.12G208900 Glycine max HOM05D018869 ORTHO05D020756 5.9e-07 57.4 81 45.7
Atru.chr10.1724 Acer truncatum HOM05D010626 ORTHO05D012901 7.7e-07 57.0 84 45.2
Carub.0002s1994 Capsella rubella HOM05D009672 ORTHO05D011357 7.7e-07 57.0 83 43.4
CARHR124630 Cardamine hirsuta HOM05D009623 ORTHO05D011251 7.7e-07 57.0 82 36.6
Potri.011G063700 Populus trichocarpa HOM05D010626 ORTHO05D012901 7.7e-07 57.0 80 42.5
C06p34240 Brassica napus HOM05D009672 ORTHO05D011357 1.0e-06 56.6 83 38.6
Carub.0001s0558 Capsella rubella HOM05D009623 ORTHO05D011251 1.0e-06 56.6 82 39.0
Cpa.g.sc209.26 Carica papaya HOM05D009623 ORTHO05D011251 1.0e-06 56.6 89 44.9
Gorai.010G242300 Gossypium raimondii HOM05D013505 ORTHO05D013816 1.0e-06 56.6 84 40.5
CARHR005760 Cardamine hirsuta HOM05D009623 ORTHO05D011251 1.3e-06 56.2 86 39.5
THA.LOC104800858 Tarenaya hassleriana HOM05D009623 ORTHO05D011251 1.3e-06 56.2 82 40.2
Manes.16G035800 Manihot esculenta HOM05D010626 ORTHO05D012901 1.7e-06 55.8 78 43.6
Manes.17G053300 Manihot esculenta HOM05D010626 ORTHO05D012901 1.7e-06 55.8 79 45.6
Lj3g0010183 Lotus japonicus HOM05D018869 ORTHO05D020756 2.2e-06 55.5 81 42.0
THA.LOC109116767 Tarenaya hassleriana HOM05D009623 ORTHO05D011251 2.2e-06 55.5 82 37.8
Cfa019597 Carpinus fangiana HOM05D009672 ORTHO05D011357 6.5e-06 53.9 80 46.2
Gohir.A06G200600 Gossypium hirsutum HOM05D013505 ORTHO05D013816 6.5e-06 53.9 85 41.2


User provided reference genes

Program Settings