Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G113800 Populus trichocarpa HOM05D012719 ORTHO05D011609 5.6e-181 637.5 323 100.0
Potri.019G084400 Populus trichocarpa HOM05D012719 ORTHO05D011609 2.4e-131 472.6 295 82.7
Thecc.08G181900 Theobroma cacao HOM05D011855 ORTHO05D011609 2.3e-78 296.6 322 51.9
Cfa018193 Carpinus fangiana HOM05D012719 ORTHO05D011609 1.9e-64 250.4 329 47.7
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 1.5e-61 240.7 322 46.3
Haze_17923 Corylus avellana HOM05D012719 ORTHO05D011609 1.3e-60 237.7 330 46.7
AUR62023571 Chenopodium quinoa HOM05D012719 ORTHO05D011609 2.1e-55 220.3 319 39.2
AUR62004652 Chenopodium quinoa HOM05D012719 ORTHO05D011609 2.2e-52 210.3 297 38.7
COL.COLO4_19764 Corchorus olitorius HOM05D012719 ORTHO05D011609 4.9e-52 209.1 343 39.7
Nn5g27743 Nelumbo nucifera HOM05D011855 ORTHO05D011609 1.6e-50 204.1 300 39.7
Ah.05g178050 Amaranthus hybridus HOM05D012719 ORTHO05D011609 7.6e-45 185.3 318 35.8
Dinv41697 Davidia involucrata HOM05D011855 ORTHO05D011609 2.9e-44 183.3 210 46.7
Sabra19G0095500 Salix brachista HOM05D012719 ORTHO05D011609 1.6e-42 177.6 134 67.2
Sc01g0001740 Simmondsia chinensis HOM05D011855 ORTHO05D011609 7.3e-40 168.7 322 35.1
Cpa.g.sc66.50 Carica papaya HOM05D011855 ORTHO05D011609 1.6e-34 151.0 344 35.2
Nitab4.5_0000560g0170 Nicotiana tabacum HOM05D011855 ORTHO05D011609 8.1e-31 138.7 322 29.8
HPP92_016119 Vanilla planifolia HOM05D012719 ORTHO05D011609 4.0e-30 136.3 318 33.0
HPP92_011411 Vanilla planifolia HOM05D012719 ORTHO05D011609 8.4e-28 128.6 291 30.9
CAN.G370.24 Capsicum annuum HOM05D011855 ORTHO05D011609 2.1e-26 124.0 297 30.0
Solyc11g017410.1 Solanum lycopersicum HOM05D011855 ORTHO05D011609 3.5e-26 123.2 327 28.4
Cc10_g11370 Coffea canephora HOM05D011855 ORTHO05D011609 4.6e-26 122.9 253 32.0
PGSC0003DMG400009225 Solanum tuberosum HOM05D011855 ORTHO05D011609 1.5e-24 117.9 299 30.1
Sopen11g009360 Solanum pennellii HOM05D011855 ORTHO05D011609 9.6e-24 115.2 302 28.8
Cfa018190 Carpinus fangiana HOM05D012719 ORTHO05D011609 1.4e-22 111.3 153 43.1
HPP92_004458 Vanilla planifolia HOM05D012719 ORTHO05D011609 1.8e-22 110.9 288 29.2
ATR0152G020 Amborella trichopoda HOM05D011855 ORTHO05D011609 1.1e-16 91.7 308 25.6
Os11g0198200 Oryza sativa ssp. japonica HOM05D065905 ORTHO05D011609 7.7e-13 79.0 338 23.4
Ah.05g180270 Amaranthus hybridus HOM05D002440 ORTHO05D002576 7.9e-10 68.9 330 23.9
Zm00001eb168890 Zea mays HOM05D065905 ORTHO05D011609 8.8e-09 65.5 335 22.4
Phvul.006G215900 Phaseolus vulgaris HOM05D002421 ORTHO05D002560 4.3e-08 63.2 314 21.3
Pp3c20_12050 Physcomitrium patens HOM05D002440 ORTHO05D002576 7.4e-08 62.4 303 25.7
Aqoxy7G00236 Aquilegia oxysepala HOM05D002440 ORTHO05D002576 9.7e-08 62.0 319 22.6
TAR381G1288 Trochodendron aralioides HOM05D002421 ORTHO05D002560 9.7e-08 62.0 330 23.3
Mapoly0005s0250 Marchantia polymorpha HOM05D002421 ORTHO05D002560 1.3e-07 61.6 272 26.1
Ah.15g095810 Amaranthus hybridus HOM05D002440 ORTHO05D002576 1.7e-07 61.2 320 24.1
vmacro20908 Vaccinium macrocarpon HOM05D002440 ORTHO05D002576 1.7e-07 61.2 299 22.4
Medtr3g073480 Medicago truncatula HOM05D002421 ORTHO05D002560 2.2e-07 60.8 324 23.5
Phvul.008G059500 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 2.2e-07 60.8 302 26.5
SEGI_01544 Sequoiadendron giganteum HOM05D002421 ORTHO05D002560 2.2e-07 60.8 322 20.8
TAR293G0004 Trochodendron aralioides HOM05D002421 ORTHO05D002560 2.8e-07 60.5 326 23.3
Gohir.A13G035600 Gossypium hirsutum HOM05D002421 ORTHO05D002560 3.7e-07 60.1 315 21.6
Gohir.D13G033900 Gossypium hirsutum HOM05D002421 ORTHO05D002560 3.7e-07 60.1 315 21.6
Gorai.013G038300 Gossypium raimondii HOM05D002421 ORTHO05D002560 3.7e-07 60.1 315 21.6
Rhsim01G0164900 Rhododendron simsii HOM05D002440 ORTHO05D002576 3.7e-07 60.1 302 21.9
SEGI_04278 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 4.8e-07 59.7 332 21.4
AUR62004681 Chenopodium quinoa HOM05D002421 ORTHO05D002560 8.2e-07 58.9 324 22.2
AUR62023599 Chenopodium quinoa HOM05D002421 ORTHO05D002560 8.2e-07 58.9 324 22.2
MBI19_g41373_MAGBIO Magnolia biondii HOM05D002440 ORTHO05D002576 8.2e-07 58.9 299 24.1
Lj6g0006413 Lotus japonicus HOM05D002421 ORTHO05D002560 1.1e-06 58.5 311 20.9
MD12G1145700 Malus domestica HOM05D002421 ORTHO05D002560 1.8e-06 57.8 326 21.8
TWI59G0213 Tripterygium wilfordii HOM05D002421 ORTHO05D002560 2.4e-06 57.4 320 23.1
Medtr8g088750 Medicago truncatula HOM05D002421 ORTHO05D002560 4.1e-06 56.6 321 22.1
TAR628G0220 Trochodendron aralioides HOM05D002421 ORTHO05D002560 4.1e-06 56.6 317 22.4
TAR629G1939 Trochodendron aralioides HOM05D002440 ORTHO05D002576 4.1e-06 56.6 304 22.4
Dinv32508 Davidia involucrata HOM05D002440 ORTHO05D002576 5.3e-06 56.2 300 22.7
Lalb_Chr15g0090671 Lupinus albus HOM05D002421 ORTHO05D002560 5.3e-06 56.2 317 22.7
Medtr2g006850 Medicago truncatula HOM05D002421 ORTHO05D002560 5.3e-06 56.2 316 22.5
Nn5g27932 Nelumbo nucifera HOM05D002421 ORTHO05D002560 5.3e-06 56.2 313 22.0
Glyma.12G170400 Glycine max HOM05D002421 ORTHO05D002560 6.9e-06 55.8 303 21.5
Psat7g062880 Pisum sativum HOM05D002421 ORTHO05D002560 6.9e-06 55.8 315 22.2


User provided reference genes

Program Settings