Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.3e-48 196.1 99 100.0
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 2.2e-43 178.7 99 92.9
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 1.5e-39 166.0 100 85.0
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 7.2e-39 163.7 100 83.0
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 9.5e-39 163.3 99 81.8
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 9.5e-39 163.3 100 85.0
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 1.6e-38 162.5 100 84.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 2.1e-38 162.2 100 83.0
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 3.6e-38 161.4 99 82.8
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 1.0e-37 159.8 99 81.8
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 3.0e-37 158.3 156 60.3
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 5.2e-37 157.5 100 82.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 5.2e-37 157.5 100 82.0
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 5.2e-37 157.5 100 82.0
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 8.8e-37 156.8 100 80.0
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.4e-36 154.8 100 76.0
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 5.7e-36 154.1 99 80.8
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 5.7e-36 154.1 99 80.8
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 1.7e-35 152.5 99 79.8
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.2e-35 152.1 98 75.5
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 2.8e-35 151.8 100 78.0
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 3.7e-35 151.4 101 76.2
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 6.3e-35 150.6 99 76.8
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 6.3e-35 150.6 99 76.8
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 1.1e-34 149.8 99 77.8
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 1.1e-34 149.8 99 77.8
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.4e-34 149.4 100 76.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.4e-34 149.4 100 76.0
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.4e-34 149.4 99 77.8
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.4e-34 148.7 100 80.0
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 2.4e-34 148.7 100 80.0
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 2.4e-34 148.7 99 78.8
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 3.1e-34 148.3 99 75.8
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 4.1e-34 147.9 99 75.8
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.1e-34 147.9 100 79.0
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 4.1e-34 147.9 100 79.0
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 5.4e-34 147.5 100 78.0
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 5.4e-34 147.5 99 76.8
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 5.4e-34 147.5 100 77.0
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 5.4e-34 147.5 100 77.0
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 7.0e-34 147.1 100 79.0
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 9.2e-34 146.7 99 77.8
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.2e-33 146.4 100 80.0
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.6e-33 146.0 99 78.8
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 2.7e-33 145.2 104 75.0
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 2.7e-33 145.2 99 76.8
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 2.7e-33 145.2 100 77.0
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 2.7e-33 145.2 99 75.8
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 3.5e-33 144.8 100 78.0
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 4.5e-33 144.4 99 75.8
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 4.5e-33 144.4 99 75.8
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 7.8e-33 143.7 99 71.7
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 7.8e-33 143.7 99 75.8
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 7.8e-33 143.7 99 76.8
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 1.0e-32 143.3 99 74.7
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.3e-32 142.9 99 69.7
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 1.3e-32 142.9 99 71.7
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 1.3e-32 142.9 99 71.7
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 1.3e-32 142.9 99 71.7
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.7e-32 142.5 99 74.7
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 2.3e-32 142.1 99 70.7
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 2.3e-32 142.1 99 70.7
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 2.9e-32 141.7 99 71.7
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 2.9e-32 141.7 99 70.7
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 2.9e-32 141.7 99 70.7
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 2.9e-32 141.7 100 74.0
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 3.8e-32 141.4 99 70.7
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 3.8e-32 141.4 99 70.7
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 3.8e-32 141.4 99 70.7
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 3.8e-32 141.4 99 70.7
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 3.8e-32 141.4 99 70.7
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 3.8e-32 141.4 99 70.7
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 3.8e-32 141.4 99 70.7
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 3.8e-32 141.4 101 74.3
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 5.0e-32 141.0 99 70.7
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 5.0e-32 141.0 99 71.7
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 5.0e-32 141.0 99 70.7
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 5.0e-32 141.0 99 69.7
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 6.6e-32 140.6 98 76.5
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 6.6e-32 140.6 99 71.7
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 8.6e-32 140.2 101 75.2
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 8.6e-32 140.2 100 74.0
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 1.1e-31 139.8 99 69.7
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 1.1e-31 139.8 98 72.4
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 1.5e-31 139.4 99 73.7
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 1.9e-31 139.0 99 69.7
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 1.9e-31 139.0 103 74.8
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 2.5e-31 138.7 102 75.5
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 3.3e-31 138.3 99 68.7
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 3.3e-31 138.3 99 69.7
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 4.3e-31 137.9 99 68.7
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 4.3e-31 137.9 99 68.7
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 4.3e-31 137.9 100 72.0
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 5.6e-31 137.5 99 68.7
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 5.6e-31 137.5 99 70.7
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.6e-31 137.5 99 70.7
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 9.5e-31 136.7 100 73.0
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 9.5e-31 136.7 99 69.7
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 1.2e-30 136.3 99 69.7
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.2e-30 136.3 100 73.0
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-30 136.0 99 69.7
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.6e-30 136.0 124 62.9
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 69.7
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 69.7
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.8e-30 135.2 91 76.9
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 3.6e-30 134.8 99 69.7
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 6.1e-30 134.0 99 73.7
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 1.0e-29 133.3 99 73.7
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 1.8e-29 132.5 91 73.6
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 2.3e-29 132.1 110 67.3
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.3e-29 132.1 91 75.8
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 4.0e-29 131.3 99 71.7
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 4.0e-29 131.3 99 71.7
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 8.9e-29 130.2 99 68.7
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.5e-28 129.4 100 68.0
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.5e-28 129.4 100 68.0
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 2.0e-28 129.0 105 68.6
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 2.6e-28 128.6 107 64.5
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 3.4e-28 128.3 100 68.0
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 3.4e-28 128.3 100 72.0
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 5.7e-28 127.5 99 65.7
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 5.7e-28 127.5 94 73.4
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 1.7e-27 125.9 101 68.3
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 1.7e-27 125.9 101 68.3
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 1.7e-27 125.9 97 67.0
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.7e-27 125.9 96 70.8
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 1.7e-27 125.9 123 58.5
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 2.2e-27 125.6 99 64.6
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 6.4e-27 124.0 99 63.6
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.1e-26 123.2 102 69.6
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.1e-26 123.2 99 63.6
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 5.4e-26 120.9 100 64.0
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.2e-25 119.8 76 77.6
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 1.6e-25 119.4 106 66.0
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 2.7e-25 118.6 98 66.3
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 1.7e-24 115.9 99 61.6
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 3.0e-24 115.2 80 73.8
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 3.0e-24 115.2 80 72.5
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 1.1e-23 113.2 75 74.7
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.1e-23 113.2 76 75.0
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 1.1e-23 113.2 97 63.9
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 1.5e-23 112.8 99 61.6
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 9.5e-23 110.2 76 73.7
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 9.5e-23 110.2 76 73.7
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 9.5e-23 110.2 76 73.7
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 1.6e-22 109.4 98 58.2
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.8e-22 108.6 60 85.0
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 8.0e-22 107.1 72 69.4
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 4.4e-20 101.3 63 79.4
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 5.8e-20 100.9 84 65.5
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 1.4e-18 96.3 83 59.0
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 1.3e-11 73.2 93 43.0
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 1.7e-08 62.8 91 38.5
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 4.3e-07 58.2 64 48.4
Psat2g095760 Pisum sativum HOM05D000552 ORTHO05D005523 4.3e-07 58.2 54 55.6


User provided reference genes

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