Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 8.1e-123 443.7 220 100.0
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 5.6e-100 367.9 196 95.9
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 3.2e-87 325.5 196 84.2
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 2.1e-86 322.8 196 84.7
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 2.1e-86 322.8 197 84.3
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 2.7e-86 322.4 197 84.3
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 3.5e-86 322.0 196 84.2
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 4.6e-86 321.6 196 82.7
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 7.9e-86 320.9 196 84.2
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.0e-85 320.5 196 83.2
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 1.3e-85 320.1 196 82.1
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.3e-85 320.1 196 81.6
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 2.3e-85 319.3 196 83.7
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 2.3e-85 319.3 196 80.6
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 3.0e-85 318.9 196 83.2
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 3.0e-85 318.9 203 79.3
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 3.0e-85 318.9 197 82.7
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 3.0e-85 318.9 196 83.7
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 3.9e-85 318.5 210 76.2
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 5.1e-85 318.2 194 83.5
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 6.7e-85 317.8 196 81.1
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 6.7e-85 317.8 196 81.1
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 6.7e-85 317.8 196 81.1
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 6.7e-85 317.8 196 82.7
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 6.7e-85 317.8 196 80.6
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 1.1e-84 317.0 196 82.1
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 1.1e-84 317.0 196 81.6
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.9e-84 316.2 197 81.2
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 2.5e-84 315.8 196 81.6
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 2.5e-84 315.8 196 80.1
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 3.3e-84 315.5 196 81.6
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 4.3e-84 315.1 196 81.6
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 4.3e-84 315.1 196 80.6
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 7.4e-84 314.3 198 82.3
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 9.6e-84 313.9 196 80.6
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 9.6e-84 313.9 196 79.6
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 1.3e-83 313.5 196 79.6
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 1.3e-83 313.5 196 79.6
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 1.6e-83 313.2 196 81.6
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 1.6e-83 313.2 196 81.1
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 2.8e-83 312.4 197 81.7
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 8.1e-83 310.8 211 72.5
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 1.1e-82 310.5 202 77.2
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 1.4e-82 310.1 192 81.2
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 1.4e-82 310.1 195 79.5
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 2.4e-82 309.3 197 80.7
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 6.9e-82 307.8 222 71.6
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 9.0e-82 307.4 214 74.3
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 3.4e-81 305.4 194 80.9
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 4.5e-81 305.1 192 81.2
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 7.6e-81 304.3 196 78.6
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 1.7e-80 303.1 196 77.6
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 1.7e-80 303.1 194 80.9
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 2.2e-80 302.8 193 80.3
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 2.2e-80 302.8 196 77.6
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 2.9e-80 302.4 194 80.4
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 3.8e-80 302.0 194 79.9
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 3.8e-80 302.0 194 79.9
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 4.9e-80 301.6 194 79.9
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 4.9e-80 301.6 227 70.5
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 6.5e-80 301.2 193 79.8
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 6.5e-80 301.2 198 75.8
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 8.4e-80 300.8 196 77.0
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 1.1e-79 300.4 193 79.8
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.1e-79 300.4 195 76.9
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 1.4e-79 300.1 193 79.8
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 1.9e-79 299.7 192 79.7
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 2.5e-79 299.3 196 76.5
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 3.2e-79 298.9 193 78.8
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 3.2e-79 298.9 194 78.9
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 3.2e-79 298.9 193 78.8
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 4.2e-79 298.5 196 78.1
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 7.1e-79 297.7 199 72.9
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 9.3e-79 297.4 193 78.8
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 1.6e-78 296.6 196 77.0
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 2.7e-78 295.8 196 76.0
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 2.7e-78 295.8 196 77.6
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.7e-78 295.8 196 75.5
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 6.0e-78 294.7 192 78.6
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 7.9e-78 294.3 195 77.9
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 1.0e-77 293.9 196 76.0
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 1.3e-77 293.5 211 71.6
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 6.7e-77 291.2 192 79.2
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 6.7e-77 291.2 192 79.2
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 5.7e-76 288.1 197 75.1
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.5e-73 280.0 196 74.5
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 4.5e-73 278.5 239 63.2
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 4.5e-73 278.5 239 63.2
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 7.6e-73 277.7 193 74.1
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 2.9e-72 275.8 195 72.8
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 3.8e-72 275.4 195 71.8
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 5.5e-71 271.6 195 70.8
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.0e-64 250.8 182 75.3
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 5.0e-64 248.4 201 63.2
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 3.6e-62 242.3 198 61.1
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 1.1e-60 237.3 165 74.5
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 9.7e-60 234.2 196 64.8
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 6.3e-59 231.5 199 59.8
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 1.4e-58 230.3 150 79.3
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 4.1e-58 228.8 150 78.7
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 1.1e-55 220.7 215 52.1
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.9e-55 219.9 152 73.7
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 1.2e-54 217.2 197 54.8
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 3.6e-54 215.7 150 72.7
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 8.8e-53 211.1 214 52.3
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 2.8e-51 206.1 149 73.8
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.4e-50 203.8 140 71.4
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 7.7e-49 198.0 121 81.8
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 4.2e-47 192.2 136 74.3
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 6.1e-46 188.3 129 72.1
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 1.0e-45 187.6 119 76.5
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 3.3e-44 182.6 121 75.2
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 3.7e-43 179.1 176 60.2
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 7.0e-42 174.9 200 55.0
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 1.2e-41 174.1 123 69.1
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 3.7e-35 152.5 196 44.9
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 3.1e-34 149.4 164 57.9
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 2.5e-31 139.8 185 48.6
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 6.3e-27 125.2 159 49.1
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 3.3e-23 112.8 211 36.5
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 8.0e-22 108.2 118 54.2
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.5e-15 87.4 46 87.0
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.6e-14 84.0 65 60.0
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 3.1e-13 79.7 82 54.9
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 4.0e-13 79.3 57 66.7
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 3.4e-12 76.3 45 88.9
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 7.0e-10 68.6 33 87.9
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.2e-09 67.8 62 64.5
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 7.3e-07 58.5 60 53.3


User provided reference genes

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