Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 5.3e-201 704.1 356 100.0
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 3.4e-155 552.0 356 79.5
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 1.7e-154 549.7 351 80.3
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 1.4e-153 546.6 357 78.2
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 2.4e-153 545.8 367 77.1
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 4.2e-153 545.0 362 78.2
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 7.8e-152 540.8 322 84.2
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 3.0e-151 538.9 359 77.2
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 5.1e-151 538.1 347 79.3
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 1.1e-150 537.0 356 78.1
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 2.5e-150 535.8 352 77.8
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 3.3e-150 535.4 348 77.9
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 9.6e-150 533.9 322 82.6
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 2.1e-149 532.7 345 78.8
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 2.1e-149 532.7 350 78.3
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 3.6e-149 531.9 323 82.7
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 4.8e-149 531.6 353 77.6
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 6.2e-149 531.2 312 84.9
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 1.8e-148 529.6 319 82.8
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 3.1e-148 528.9 320 81.9
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 4.0e-148 528.5 321 80.7
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.3e-148 528.1 349 77.4
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 6.9e-148 527.7 351 77.2
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 6.9e-148 527.7 357 77.6
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 1.5e-147 526.6 356 77.0
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.5e-147 526.6 320 81.6
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 1.5e-147 526.6 321 81.3
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 5.8e-147 524.6 338 79.3
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 7.6e-147 524.2 352 78.4
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 9.9e-147 523.9 312 83.7
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 9.9e-147 523.9 343 77.8
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 3.8e-146 521.9 321 79.8
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 6.4e-146 521.2 321 79.8
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 8.4e-146 520.8 311 82.6
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 7.1e-145 517.7 348 78.7
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 2.7e-144 515.8 356 74.4
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 4.6e-144 515.0 320 79.7
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 1.0e-143 513.8 372 72.6
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 1.3e-143 513.5 376 71.8
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.7e-143 513.1 322 78.0
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 3.0e-143 512.3 305 83.0
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 1.1e-142 510.4 316 78.5
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 3.3e-142 508.8 309 80.3
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 1.3e-141 506.9 322 78.0
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 6.2e-141 504.6 325 76.9
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 8.1e-141 504.2 355 72.7
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 8.1e-141 504.2 367 71.4
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 8.1e-141 504.2 292 84.6
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 1.4e-140 503.4 356 74.4
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 2.4e-140 502.7 349 75.1
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 2.4e-140 502.7 346 74.3
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 3.1e-140 502.3 344 76.2
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 4.0e-140 501.9 312 80.4
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 4.0e-140 501.9 297 84.2
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.5e-139 500.0 344 76.7
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 2.6e-139 499.2 348 73.9
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 3.4e-139 498.8 362 74.0
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 4.5e-139 498.4 348 74.1
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 4.5e-139 498.4 318 78.9
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 1.3e-138 496.9 347 73.8
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 1.7e-138 496.5 348 73.6
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 2.9e-138 495.7 306 79.7
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 3.8e-138 495.4 307 81.1
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 4.9e-138 495.0 359 72.4
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 4.9e-138 495.0 343 74.6
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 8.4e-138 494.2 306 80.1
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 5.4e-137 491.5 326 74.8
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 7.1e-137 491.1 346 74.6
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 3.5e-136 488.8 307 79.8
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 7.9e-136 487.6 306 79.4
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 1.3e-135 486.9 309 79.0
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 6.7e-135 484.6 359 71.0
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 3.1e-132 475.7 319 74.0
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 9.0e-132 474.2 347 70.9
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 3.4e-131 472.2 306 77.5
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 1.0e-130 470.7 369 67.2
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 1.0e-130 470.7 369 67.2
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 2.2e-130 469.5 369 68.6
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 2.9e-130 469.2 347 70.6
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 4.9e-130 468.4 319 72.7
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 6.5e-130 468.0 394 65.5
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 4.2e-129 465.3 312 77.9
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 7.4e-126 454.5 376 66.2
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 1.8e-124 449.9 284 78.5
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 3.8e-122 442.2 321 71.3
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 2.7e-120 436.0 274 79.6
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.0e-119 434.1 272 83.8
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 1.5e-118 430.3 269 79.6
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.1e-113 414.1 281 73.3
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 1.2e-112 410.6 306 67.3
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 3.3e-110 402.5 311 63.7
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 6.5e-106 388.3 290 71.0
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 6.5e-106 388.3 269 75.1
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.0e-102 376.7 239 77.4
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.8e-101 372.9 310 66.5
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 3.7e-101 372.5 298 60.4
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 4.1e-100 369.0 235 77.9
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 9.1e-100 367.9 196 95.9
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 2.9e-98 362.8 326 54.6
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 2.3e-95 353.2 338 60.4
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 6.7e-95 351.7 272 69.5
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 8.8e-95 351.3 268 66.0
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 1.3e-93 347.4 207 84.1
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 9.1e-92 341.3 199 82.4
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 6.8e-87 325.1 350 55.7
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 2.8e-85 319.7 310 58.4
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 5.4e-84 315.5 341 50.7
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.1e-81 307.8 202 75.7
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 1.7e-74 283.9 216 64.8
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 1.6e-64 250.8 150 82.7
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 8.3e-61 238.4 288 46.2
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 1.9e-60 237.3 184 66.8
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 1.1e-57 228.0 132 83.3
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 7.5e-54 215.3 249 51.0
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 5.4e-52 209.1 119 85.7
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 7.8e-51 205.3 122 83.6
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 1.9e-49 200.7 326 37.4
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 4.3e-49 199.5 139 70.5
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 9.5e-49 198.4 140 70.7
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.2e-46 191.4 198 57.1
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 2.6e-46 190.3 127 75.6
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 2.6e-46 190.3 127 75.6
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 3.4e-46 189.9 122 77.0
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 2.7e-43 180.3 123 73.2
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.4e-39 167.9 157 63.7
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.4e-39 167.9 162 61.1
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 3.2e-36 156.8 89 85.4
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.3e-29 134.8 107 64.5
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 3.1e-23 113.6 114 57.0
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 3.4e-22 110.2 82 63.4
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 4.9e-21 106.3 55 87.3
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 4.0e-15 86.7 155 38.1
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 1.2e-14 85.1 55 74.5
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 1.0e-13 82.0 82 54.9
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 1.7e-13 81.3 87 54.0
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 2.2e-13 80.9 57 68.4
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 2.2e-13 80.9 112 40.2
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 4.9e-13 79.7 75 57.3
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 1.8e-10 71.2 65 56.9
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 7.4e-09 65.9 38 76.3
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 3.7e-08 63.5 141 32.6
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 8.2e-08 62.4 40 70.0
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 4.1e-07 60.1 42 71.4


User provided reference genes

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