Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1885.9 930 100.0
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1625.5 1013 82.4
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1602.0 934 85.0
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1457.2 1058 72.2
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1363.6 936 74.3
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1361.7 954 72.9
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1354.3 952 71.5
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1351.7 945 73.2
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1351.3 926 73.9
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1349.3 956 73.4
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1344.3 928 73.0
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1317.8 940 71.4
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1316.2 940 71.4
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1314.7 950 70.7
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1307.0 932 71.6
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1295.8 978 68.8
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1294.6 948 70.6
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1289.2 943 70.9
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1288.5 943 70.6
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1286.2 938 69.9
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1285.8 949 70.3
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1285.8 947 70.4
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1282.3 923 71.9
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1275.8 951 69.2
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1268.4 947 69.3
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1264.2 929 70.0
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1255.7 932 69.8
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1255.4 946 68.5
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1254.2 924 69.6
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1252.3 919 69.0
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1249.6 929 69.2
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1249.2 938 68.2
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1247.6 926 68.9
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1245.3 916 68.3
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1235.3 1052 63.6
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1234.6 927 67.5
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1233.0 928 68.1
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1232.6 944 67.2
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1231.1 970 66.6
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1230.7 939 68.1
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1226.8 927 67.9
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1220.3 936 66.0
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1218.4 954 66.8
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1213.4 1004 62.9
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1213.0 938 67.6
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1209.9 930 67.4
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1209.5 923 66.6
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1199.1 936 66.8
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1198.7 892 67.8
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1198.3 928 66.1
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1195.6 938 67.2
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1190.3 931 66.0
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1187.6 946 64.7
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1186.8 939 66.0
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1186.0 936 64.6
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1183.7 939 64.3
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1181.8 946 64.4
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1176.4 939 64.9
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1175.6 868 70.5
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1175.2 924 66.9
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1172.9 935 65.1
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1172.5 940 63.7
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1172.5 947 63.5
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1171.8 938 64.4
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1171.8 935 64.0
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1171.4 812 73.0
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1171.0 919 66.4
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1170.2 940 63.7
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1170.2 940 63.7
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1169.5 953 62.9
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1167.1 944 64.3
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1159.1 1011 60.7
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1150.2 1011 60.2
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1147.9 1011 60.1
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1147.9 948 62.6
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1147.5 931 64.2
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1145.2 931 64.0
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1144.4 977 61.4
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1142.1 1000 61.2
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1141.7 954 62.5
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1140.9 921 63.7
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1139.8 945 62.5
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1133.2 945 62.0
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1133.2 945 62.0
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1120.9 964 61.8
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1115.1 960 61.4
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1112.4 987 61.2
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 936 61.4
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 0.0e+00 1107.4 845 68.5
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1105.1 920 63.9
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 0.0e+00 1099.7 1053 56.1
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1099.3 915 63.0
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1097.4 969 59.4
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1094.7 914 62.9
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1094.3 924 60.9
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1085.9 915 60.7
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1080.5 925 59.8
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.3e-311 1073.2 948 60.8
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 1.4e-309 1066.2 940 61.1
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 7.7e-308 1060.4 853 65.4
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 3.8e-307 1058.1 938 58.6
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 9.7e-303 1043.5 936 59.1
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 7.7e-300 1033.9 880 61.8
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 3.6e-297 1025.0 915 58.3
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.4e-296 1023.1 957 57.5
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 5.2e-296 1021.1 1051 53.9
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 3.3e-295 1018.5 1166 50.6
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 6.3e-294 1014.2 954 57.3
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.4e-293 1013.1 961 56.7
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 3.5e-292 1008.4 946 57.3
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 8.0e-289 997.3 801 63.9
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.7e-273 944.9 693 70.4
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 3.7e-270 935.3 775 63.6
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 2.9e-262 909.1 915 55.1
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.0e-259 900.6 767 60.1
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 5.0e-259 898.3 953 52.6
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.1e-253 880.6 971 49.7
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 1.2e-249 867.1 901 51.2
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 2.1e-241 839.7 845 52.8
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 8.4e-238 827.8 1092 43.3
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 6.4e-222 775.0 726 57.2
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 2.3e-211 740.0 625 62.1
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.3e-211 740.0 917 46.7
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 4.3e-202 709.1 665 58.8
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 3.6e-196 689.5 754 53.1
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 5.0e-190 669.1 412 78.4
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.1e-160 570.1 356 78.7
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 4.1e-160 569.7 469 65.7
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.9e-158 563.5 402 71.6
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 8.9e-155 552.0 387 71.6
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 9.8e-146 521.9 713 45.0
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 9.9e-138 495.4 616 47.2
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.5e-135 486.9 468 56.8
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 6.6e-126 456.1 288 76.7
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.5e-125 454.1 305 73.1
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 5.6e-125 453.0 552 47.6
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 7.3e-117 426.0 284 71.8
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.6e-108 398.3 323 61.9
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 9.6e-101 372.5 341 55.7
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 2.7e-95 354.4 224 78.6
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 5.0e-57 227.3 167 70.7
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 2.9e-49 201.4 128 76.6
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.1e-48 199.5 211 50.7
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.3e-48 198.0 148 66.2
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 7.2e-48 196.8 128 74.2
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.9e-40 172.2 280 41.1
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.3e-32 144.8 119 57.1
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.2e-31 142.9 91 73.6
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 7.5e-29 133.7 113 58.4
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 9.8e-29 133.3 76 82.9
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 6.2e-23 114.0 86 59.3
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 5.1e-17 94.4 66 75.8
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.5e-16 92.8 54 77.8
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 3.3e-16 91.7 57 78.9
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.6e-15 89.4 181 34.8
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 5.2e-14 84.3 91 52.7
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 7.6e-13 80.5 82 52.4
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 5.4e-11 74.3 95 38.9
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 1.0e-09 70.1 68 52.9
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 3.0e-09 68.6 74 47.3
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 3.9e-09 68.2 58 53.4
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 1.9e-08 65.9 53 56.6
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.3e-08 64.7 62 51.6
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 2.1e-07 62.4 53 54.7
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.1e-07 62.4 76 46.1
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 2.8e-07 62.0 144 31.9
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 4.8e-07 61.2 35 74.3
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.4e-06 58.9 52 57.7
Medtr1g105770 Medicago truncatula HOM05D004101 ORTHO05D005221 6.9e-06 57.4 72 44.4


User provided reference genes

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