Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G098066 Populus trichocarpa HOM05D022648 ORTHO05D023191 1.4e-86 322.8 153 100.0
GSVIVG01036343001 Vitis vinifera HOM05D000067 ORTHO05D000097 3.4e-19 99.0 98 49.0
Atru.chr13.248 Acer truncatum HOM05D000002 ORTHO05D000001 1.7e-10 70.1 101 40.6
Atru.chr2.3010 Acer truncatum HOM05D000002 ORTHO05D000001 2.9e-10 69.3 101 40.6
SEGI_13448 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.9e-09 66.6 79 38.0
TAR180G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.9e-09 66.6 80 40.0
MD12G1231800 Malus domestica HOM05D000002 ORTHO05D000001 5.4e-09 65.1 84 34.5
MD17G1248200 Malus domestica HOM05D000002 ORTHO05D000001 1.2e-08 63.9 72 37.5
CSS0020274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-08 63.2 99 35.4
GSVIVG01016108001 Vitis vinifera HOM05D000002 ORTHO05D000001 3.5e-08 62.4 90 38.9
CSS0021283 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.6e-08 62.0 87 34.5
CSS0027920 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.0e-08 61.6 87 34.5
COL.COLO4_36674 Corchorus olitorius HOM05D042556 ORTHO05D000001 1.0e-07 60.8 99 33.3
CSS0021297 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-07 60.1 126 29.4
Hma1.2p1_0445F.1_g154480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.3e-07 59.7 85 36.5
MD13G1099200 Malus domestica HOM05D000002 ORTHO05D000001 2.3e-07 59.7 61 39.3
Sabra17G0101800 Salix brachista HOM05D000002 ORTHO05D000001 3.9e-07 58.9 85 38.8
TAR218G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.9e-07 58.9 80 35.0
Solyc11g021010.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 5.1e-07 58.5 155 29.7
TAR175G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 5.1e-07 58.5 77 32.5
CSS0025925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.6e-07 58.2 111 32.4
Atru.chr9.1723 Acer truncatum HOM05D022648 ORTHO05D023191 8.6e-07 57.8 79 41.8
CSS0041353 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.6e-07 57.8 73 37.0
Gorai.008G092500 Gossypium raimondii HOM05D000002 ORTHO05D000001 8.6e-07 57.8 90 34.4
MD16G1247000 Malus domestica HOM05D000002 ORTHO05D003361 8.6e-07 57.8 85 34.1
Sabra16G0104200 Salix brachista HOM05D000002 ORTHO05D000001 8.6e-07 57.8 85 37.6
Sopen07g003750 Solanum pennellii HOM05D000002 ORTHO05D000001 8.6e-07 57.8 66 39.4
TAR720G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 8.6e-07 57.8 83 34.9
CSS0011950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-06 57.4 81 32.1
ClCG05G013060 Citrullus lanatus HOM05D007933 ORTHO05D000001 1.1e-06 57.4 68 35.3
Hma1.2p1_1458F.1_g284730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.1e-06 57.4 72 38.9
Sabra10G0062000 Salix brachista HOM05D000002 ORTHO05D000001 1.1e-06 57.4 85 40.0
Hma1.2p1_0110F.1_g052720 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.5e-06 57.0 91 35.2
MD12G1185900 Malus domestica HOM05D000002 ORTHO05D000001 1.5e-06 57.0 109 31.2
CSS0008547 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-06 56.6 73 35.6
CSS0025666 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-06 56.6 87 35.6
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 2.5e-06 56.2 92 30.4
CSS0034935 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.5e-06 56.2 73 37.0
COL.COLO4_14937 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.5e-06 56.2 83 33.7
HanXRQChr17g0541481 Helianthus annuus HOM05D000002 ORTHO05D000001 2.5e-06 56.2 72 36.1
Rhsim06G0171300 Rhododendron simsii HOM05D001152 ORTHO05D000967 2.5e-06 56.2 69 39.1
Atru.chr9.1635 Acer truncatum HOM05D000002 ORTHO05D000001 3.3e-06 55.8 73 38.4
CSS0034832 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.3e-06 55.8 73 37.0
Ciclev10003509m.g Citrus clementina HOM05D000002 ORTHO05D000001 3.3e-06 55.8 104 30.8
Rhsim07G0051100 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.3e-06 55.8 95 34.7
Atru.chr2.1099 Acer truncatum HOM05D000002 ORTHO05D000001 4.3e-06 55.5 94 34.0
Manes.06G036650 Manihot esculenta HOM05D000002 ORTHO05D000001 4.3e-06 55.5 89 36.0
Prupe.1G170400 Prunus persica HOM05D000002 ORTHO05D000001 4.3e-06 55.5 93 35.5
Actinidia03788 Actinidia chinensis HOM05D000002 ORTHO05D000001 5.6e-06 55.1 96 35.4
Rhsim03G0193600 Rhododendron simsii HOM05D000100 ORTHO05D000052 5.6e-06 55.1 95 30.5
SGA_v2.0_scaffold88G27191 Striga asiatica HOM05D001613 ORTHO05D001556 5.6e-06 55.1 70 37.1
Atru.chr4.967 Acer truncatum HOM05D000002 ORTHO05D000001 7.3e-06 54.7 77 37.7
CSS0004364 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.3e-06 54.7 120 30.8
CSS0018413 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.3e-06 54.7 70 38.6
Hma1.2p1_0717F.1_g208250 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.3e-06 54.7 86 38.4
Hma1.2p1_2472F.1_g322770 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.3e-06 54.7 86 38.4
Solyc06g082797.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 7.3e-06 54.7 95 34.7
TPR.G32053 Trifolium pratense HOM05D000002 ORTHO05D000001 7.3e-06 54.7 74 36.5
Atru.chr5.2226 Acer truncatum HOM05D000002 ORTHO05D000001 9.6e-06 54.3 73 35.6
Hma1.2p1_1397F.1_g280780 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 9.6e-06 54.3 98 33.7
MD00G1024600 Malus domestica HOM05D000002 ORTHO05D000001 9.6e-06 54.3 109 33.9
MD12G1254500 Malus domestica HOM05D002861 ORTHO05D003104 9.6e-06 54.3 98 29.6
PSO339G3884 Papaver somniferum HOM05D000002 ORTHO05D000001 9.6e-06 54.3 97 28.9
RcHm_v2.0_Chr1g0347771 Rosa chinensis HOM05D000002 ORTHO05D000001 9.6e-06 54.3 77 31.2
Sabra18G0120700 Salix brachista HOM05D000002 ORTHO05D000001 9.6e-06 54.3 84 33.3


User provided reference genes

Program Settings