Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.9e-93 345.9 179 100.0
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 3.0e-83 312.0 179 89.4
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 1.4e-77 293.1 179 81.6
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 3.0e-75 285.4 179 80.4
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 5.6e-74 281.2 179 79.9
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 3.6e-73 278.5 179 79.3
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 1.1e-72 276.9 179 79.9
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 6.9e-72 274.2 177 76.8
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 4.5e-71 271.6 179 76.5
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 7.6e-71 270.8 175 77.1
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 7.6e-71 270.8 174 77.6
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 1.3e-70 270.0 174 78.2
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 1.7e-70 269.6 175 76.6
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 2.9e-70 268.9 177 76.8
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 4.9e-70 268.1 177 75.7
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 6.4e-70 267.7 182 75.8
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 1.4e-69 266.5 178 75.3
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 1.4e-69 266.5 178 74.7
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.4e-69 265.8 180 75.0
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.2e-68 263.5 179 75.4
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.2e-68 263.5 179 73.2
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 1.6e-68 263.1 178 73.0
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 2.1e-68 262.7 178 74.2
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 2.1e-68 262.7 170 77.1
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 2.7e-68 262.3 179 74.9
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 3.5e-68 261.9 179 76.0
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.5e-68 261.9 179 74.9
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 3.5e-68 261.9 179 74.9
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 4.6e-68 261.5 174 74.1
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 6.0e-68 261.2 165 80.0
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 1.0e-67 260.4 173 76.9
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 1.0e-67 260.4 187 70.6
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 1.8e-67 259.6 179 73.2
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.8e-67 259.6 174 76.4
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 3.0e-67 258.8 178 70.8
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 3.0e-67 258.8 163 78.5
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 3.9e-67 258.5 178 74.2
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 5.1e-67 258.1 175 74.9
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 6.7e-67 257.7 174 74.7
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 8.7e-67 257.3 175 73.7
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 2.5e-66 255.8 181 73.5
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 3.3e-66 255.4 197 66.0
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 4.3e-66 255.0 179 71.5
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 5.6e-66 254.6 177 71.8
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 7.4e-66 254.2 176 72.7
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 9.6e-66 253.8 178 71.3
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 4.8e-65 251.5 166 75.3
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 4.8e-65 251.5 175 72.6
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 4.8e-65 251.5 175 72.6
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 4.8e-65 251.5 166 75.3
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 6.2e-65 251.1 174 74.1
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 8.1e-65 250.8 175 72.6
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 1.4e-64 250.0 179 69.8
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 1.8e-64 249.6 174 71.8
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 2.4e-64 249.2 154 79.2
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 2.4e-64 249.2 154 79.9
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 2.4e-64 249.2 179 69.3
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 2.4e-64 249.2 175 69.1
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 3.1e-64 248.8 177 71.2
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 3.1e-64 248.8 162 74.7
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 4.0e-64 248.4 177 71.8
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 5.3e-64 248.1 166 75.3
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 5.3e-64 248.1 164 75.6
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 5.3e-64 248.1 164 75.6
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 6.9e-64 247.7 177 71.2
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 6.9e-64 247.7 174 71.3
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 6.9e-64 247.7 176 71.6
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 1.2e-63 246.9 171 71.3
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.5e-63 246.5 166 74.1
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.5e-63 246.5 175 68.0
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 2.0e-63 246.1 187 70.1
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 2.0e-63 246.1 174 71.8
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.4e-63 245.4 184 68.5
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 4.5e-63 245.0 178 71.3
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 4.5e-63 245.0 164 75.0
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 4.5e-63 245.0 164 75.0
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 4.5e-63 245.0 175 68.0
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 7.6e-63 244.2 208 62.5
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 7.6e-63 244.2 177 71.2
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 1.0e-62 243.8 177 67.8
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.0e-62 243.8 191 66.5
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 1.3e-62 243.4 164 74.4
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 2.2e-62 242.7 179 67.0
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.2e-62 242.7 174 69.5
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 3.8e-62 241.9 191 67.5
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 8.4e-62 240.7 178 67.4
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 1.4e-61 240.0 172 70.9
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.9e-61 239.6 172 70.9
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 4.2e-61 238.4 178 64.6
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 5.5e-61 238.0 173 68.8
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 5.5e-61 238.0 162 73.5
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 1.2e-60 236.9 174 70.1
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.6e-60 236.5 174 67.8
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 2.1e-60 236.1 154 75.3
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.5e-60 235.3 178 66.9
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.0e-59 233.8 174 66.7
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.0e-59 233.8 161 70.8
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 1.8e-59 233.0 180 65.0
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 1.8e-59 233.0 190 63.7
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 3.0e-59 232.3 193 64.2
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 3.0e-59 232.3 177 65.0
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 3.9e-59 231.9 166 67.5
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 3.9e-59 231.9 162 67.3
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 8.7e-59 230.7 163 71.8
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 1.1e-58 230.3 177 68.4
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.5e-58 229.9 172 66.3
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 3.3e-58 228.8 125 93.6
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 4.3e-58 228.4 162 74.7
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 5.7e-58 228.0 148 77.7
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.3e-57 226.9 193 64.2
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 6.2e-57 224.6 160 71.2
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 6.2e-57 224.6 179 62.0
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 8.2e-57 224.2 179 62.6
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.4e-56 223.4 250 52.0
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.1e-56 222.2 190 64.2
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 5.3e-56 221.5 203 60.1
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.5e-55 219.9 179 63.1
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.0e-55 219.5 158 69.0
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.0e-55 219.5 158 69.0
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.6e-55 219.2 158 68.4
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 1.3e-54 216.9 148 74.3
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 1.7e-54 216.5 174 63.2
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 2.9e-54 215.7 175 65.7
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 8.4e-54 214.2 178 60.1
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 1.1e-53 213.8 171 64.9
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 2.5e-53 212.6 177 65.0
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 4.6e-52 208.4 161 60.2
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 1.3e-51 206.8 138 76.1
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 3.0e-51 205.7 161 58.4
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 3.3e-50 202.2 125 78.4
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 2.8e-49 199.1 124 80.6
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 2.8e-49 199.1 125 77.6
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 4.8e-49 198.4 125 79.2
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 6.3e-49 198.0 123 79.7
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 2.4e-48 196.1 181 59.7
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 3.1e-48 195.7 124 78.2
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 6.9e-48 194.5 122 80.3
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.2e-47 193.7 123 77.2
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 5.5e-45 184.9 155 63.9
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 6.1e-44 181.4 132 69.7
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.3e-43 179.5 130 69.2
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 2.8e-41 172.6 136 65.4
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 4.8e-41 171.8 143 60.1
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 4.1e-40 168.7 152 53.3
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 2.0e-39 166.4 130 62.3
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 4.5e-39 165.2 143 55.9
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.7e-38 163.3 143 55.9
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 4.2e-37 158.7 124 59.7
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 4.2e-37 158.7 152 53.9
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 4.2e-37 158.7 150 52.7
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 5.5e-37 158.3 155 51.0
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 3.9e-35 152.1 116 67.2
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 5.1e-35 151.8 156 50.6
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 2.0e-31 139.8 88 80.7
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 4.2e-29 132.1 111 63.1
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.0e-27 127.5 108 59.3
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 4.1e-24 115.5 164 43.3
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.5e-18 97.1 90 54.4
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 9.4e-13 77.8 78 46.2
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 2.0e-10 70.1 44 72.7
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 5.7e-10 68.6 46 73.9
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 5.7e-10 68.6 46 73.9
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 1.7e-09 67.0 46 71.7
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 2.8e-09 66.2 47 70.2
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 6.3e-09 65.1 50 56.0
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 8.6e-06 54.7 57 54.4


User provided reference genes

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