Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 0.0e+00 1315.4 651 100.0
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 0.0e+00 1106.7 663 84.5
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 9.3e-260 900.2 644 69.6
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 2.3e-242 842.4 641 67.4
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 3.4e-238 828.6 640 65.9
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 7.2e-236 820.8 640 65.2
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 2.6e-233 812.4 639 64.2
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 1.4e-231 806.6 640 63.8
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 4.1e-231 805.1 637 62.8
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.7e-229 799.7 649 61.8
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 9.4e-228 793.9 639 63.4
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.0e-226 788.9 651 61.1
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 2.6e-225 785.8 649 61.2
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.6e-225 785.8 649 61.2
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 3.3e-225 785.4 639 63.4
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 1.3e-224 783.5 644 61.2
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 6.3e-224 781.2 642 61.5
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 7.7e-222 774.2 636 63.1
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 3.2e-220 768.8 640 63.3
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 5.5e-220 768.1 639 61.2
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 2.1e-219 766.1 643 61.4
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 1.0e-218 763.8 643 61.9
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 2.3e-218 762.7 642 60.9
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 5.2e-218 761.5 642 61.1
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 6.7e-218 761.1 656 59.1
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 2.0e-217 759.6 643 60.8
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 4.4e-217 758.4 643 60.5
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 9.7e-217 757.3 642 60.9
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 5.9e-214 748.0 641 58.3
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 2.2e-213 746.1 644 59.3
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 1.1e-212 743.8 652 60.1
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 3.2e-212 742.3 641 59.6
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 9.4e-212 740.7 641 59.6
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 2.3e-210 736.1 543 68.3
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 1.7e-208 729.9 640 59.5
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 1.7e-208 729.9 640 59.4
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 4.1e-207 725.3 512 69.5
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 7.0e-207 724.5 631 58.8
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 2.0e-206 723.0 639 58.1
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 4.5e-206 721.8 639 57.4
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 5.9e-206 721.5 641 59.1
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 8.6e-205 717.6 643 58.2
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 8.6e-205 717.6 643 57.1
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 8.6e-205 717.6 643 57.1
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 1.5e-204 716.8 641 57.9
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 7.2e-204 714.5 640 58.3
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 7.2e-204 714.5 547 65.6
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 1.2e-203 713.8 638 58.0
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 2.8e-203 712.6 648 56.6
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 1.4e-202 710.3 620 59.5
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 3.0e-202 709.1 637 57.9
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 5.7e-201 704.9 649 57.3
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 7.5e-201 704.5 638 58.3
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 2.2e-200 703.0 646 57.7
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 1.1e-199 700.7 647 56.3
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 2.4e-199 699.5 645 57.5
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 7.0e-199 698.0 637 56.8
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 9.2e-199 697.6 639 56.2
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 1.2e-198 697.2 642 57.0
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 2.0e-198 696.4 645 57.4
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 2.9e-197 692.6 644 56.1
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 1.2e-195 687.2 642 55.9
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 8.0e-195 684.5 645 56.6
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.0e-193 679.9 676 54.1
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 2.4e-191 672.9 643 55.4
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 4.1e-191 672.2 651 55.1
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 7.0e-191 671.4 446 74.4
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 9.2e-191 671.0 644 54.7
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 5.6e-188 661.8 645 53.6
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 4.0e-186 655.6 644 54.5
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 2.0e-185 653.3 594 57.1
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 1.9e-183 646.7 646 53.9
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 4.6e-182 642.1 519 62.0
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 6.0e-182 641.7 519 62.0
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 1.4e-178 630.6 641 51.3
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 3.1e-178 629.4 520 61.3
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 7.5e-177 624.8 651 52.2
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 1.4e-175 620.5 453 66.7
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 5.4e-175 618.6 547 59.0
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 2.1e-174 616.7 560 57.3
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.6e-171 607.1 537 57.9
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.7e-168 597.0 719 47.3
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 1.1e-167 594.3 539 54.2
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 1.2e-166 590.9 631 51.2
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.7e-166 589.7 530 57.5
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 6.0e-166 588.6 644 50.0
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 7.3e-164 581.6 406 70.0
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 1.6e-163 580.5 454 63.7
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 1.8e-162 577.0 391 70.8
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 2.4e-162 576.6 561 54.9
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 6.4e-160 568.5 544 55.0
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 8.4e-160 568.2 389 71.0
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 3.3e-156 556.2 393 69.2
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 1.4e-154 550.8 543 52.9
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 2.4e-154 550.1 453 61.1
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 6.9e-154 548.5 396 68.2
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 6.9e-154 548.5 396 68.2
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 9.0e-154 548.1 510 56.5
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 1.2e-153 547.7 393 67.4
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 9.3e-151 538.1 610 49.2
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 7.6e-145 518.5 522 53.6
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 3.9e-141 506.1 488 56.1
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 5.3e-138 495.7 585 45.8
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.9e-133 479.6 490 52.0
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 1.3e-128 464.5 346 64.7
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 1.9e-127 460.7 493 48.9
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 8.2e-123 445.3 401 57.6
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 4.1e-122 443.0 472 48.1
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 7.7e-121 438.7 490 47.1
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 5.7e-116 422.5 264 76.9
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 8.0e-110 402.1 258 74.4
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.3e-108 396.7 384 50.8
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.8e-104 383.3 521 39.5
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.2e-96 357.5 345 52.8
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 5.2e-93 346.3 276 60.9
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.2e-92 345.1 532 40.2
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 2.6e-92 344.0 452 39.8
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 4.1e-90 336.7 307 53.1
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.1e-86 324.3 392 45.9
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 9.8e-76 288.9 191 68.6
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.2e-67 261.2 509 33.6
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 4.1e-66 256.9 160 76.2
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 5.4e-58 229.9 249 51.4
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 5.2e-53 213.4 133 74.4
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 1.1e-50 205.7 229 48.5
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.1e-47 195.7 195 45.6
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 4.7e-46 190.3 256 42.6
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 2.4e-42 177.9 156 57.1
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 2.6e-36 157.9 157 53.5
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 4.9e-35 153.7 231 39.0
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.3e-32 144.8 125 58.4
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.1e-30 138.3 127 55.9
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 6.2e-30 136.7 127 54.3
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 4.0e-21 107.5 137 45.3
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 1.7e-19 102.1 98 55.1
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 1.1e-15 89.4 235 31.1
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.2e-11 75.1 74 47.3
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 6.7e-08 63.5 68 55.9
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 1.1e-07 62.8 78 44.9
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 1.1e-07 62.8 78 44.9


User provided reference genes

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