Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 0.0e+00 1278.5 722 100.0
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 9.6e-282 973.4 724 81.8
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 4.7e-180 635.6 707 62.0
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 6.0e-82 309.7 691 39.2
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.0e-65 255.8 860 35.9
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.6e-58 231.9 1027 31.1
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 1.7e-52 211.8 765 33.3
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 7.9e-50 203.0 809 34.0
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 7.3e-48 196.4 763 30.3
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 2.9e-44 184.5 804 32.7
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 2.4e-43 181.4 818 34.1
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 5.5e-43 180.3 814 30.7
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 7.9e-42 176.4 730 30.7
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 2.8e-39 167.9 739 29.6
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 3.7e-39 167.5 731 30.1
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 9.0e-38 162.9 756 31.1
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 3.0e-33 147.9 840 31.2
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 5.1e-33 147.1 309 39.8
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 6.7e-33 146.7 830 27.2
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 9.6e-32 142.9 832 26.7
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 1.3e-31 142.5 277 41.5
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 3.1e-30 137.9 748 28.6
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 3.1e-30 137.9 519 30.6
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 1.2e-29 136.0 310 36.5
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.6e-29 134.8 262 38.2
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 4.5e-29 134.0 818 26.8
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 5.0e-28 130.6 741 27.9
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 1.1e-27 129.4 437 29.1
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 2.5e-27 128.3 738 29.0
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 3.2e-27 127.9 273 42.9
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 4.2e-27 127.5 467 29.6
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 4.2e-27 127.5 315 36.8
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.6e-26 125.6 794 27.0
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.6e-26 125.6 288 37.2
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.1e-26 125.2 262 37.4
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.1e-26 125.2 318 33.3
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 3.5e-26 124.4 819 27.1
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 1.8e-25 122.1 261 36.8
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 1.8e-25 122.1 750 26.9
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 1.8e-25 122.1 745 27.9
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.3e-25 121.7 263 36.9
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 8.7e-25 119.8 297 34.7
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 1.9e-24 118.6 277 34.7
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.9e-24 118.6 747 29.3
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.5e-24 118.2 298 35.2
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 9.7e-24 116.3 263 36.9
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.3e-23 115.9 319 40.4
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 1.3e-23 115.9 320 39.4
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 4.8e-23 114.0 776 28.2
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 8.2e-23 113.2 237 35.9
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 8.2e-23 113.2 237 35.9
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 8.2e-23 113.2 237 35.4
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.8e-22 112.1 300 34.0
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 3.1e-22 111.3 743 27.1
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 3.1e-22 111.3 301 41.5
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 6.9e-22 110.2 138 52.9
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 6.9e-22 110.2 312 34.3
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 6.9e-22 110.2 319 38.2
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 1.2e-21 109.4 306 30.7
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 1.2e-21 109.4 784 27.7
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.4e-21 107.8 336 30.7
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 5.9e-21 107.1 304 32.6
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 5.9e-21 107.1 304 32.6
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 5.9e-21 107.1 268 35.4
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 1.0e-20 106.3 300 31.0
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 1.7e-20 105.5 324 40.4
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 1.7e-20 105.5 731 26.0
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 3.8e-20 104.4 767 24.6
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 3.8e-20 104.4 752 25.8
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 3.8e-20 104.4 300 31.3
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 6.5e-20 103.6 339 31.6
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 1.4e-19 102.4 753 25.2
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.9e-19 102.1 270 34.4
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 3.2e-19 101.3 316 32.9
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 3.2e-19 101.3 333 33.6
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 3.2e-19 101.3 724 24.3
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 4.2e-19 100.9 218 37.2
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 7.2e-19 100.1 273 37.0
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 7.2e-19 100.1 131 47.3
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 1.6e-18 99.0 247 34.0
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 2.3e-17 95.1 215 37.7
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 3.0e-17 94.7 715 25.9
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 8.8e-17 93.2 722 24.9
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.1e-16 92.8 293 29.7
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 1.5e-16 92.4 439 26.7
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.5e-16 92.4 140 45.7
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.0e-16 92.0 727 26.3
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 2.5e-16 91.7 726 24.4
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 5.7e-16 90.5 312 31.7
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.7e-15 89.0 152 40.1
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.7e-15 89.0 152 40.1
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.7e-15 89.0 226 35.8
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.7e-15 89.0 278 31.3
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 1.7e-15 89.0 298 31.5
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.8e-15 88.2 725 26.1
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 1.1e-14 86.3 708 25.3
Thhalv10022236m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.1e-14 86.3 225 32.0
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 1.1e-14 86.3 784 25.5
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.4e-14 85.9 321 32.4
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 1.8e-14 85.5 243 32.1
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 1.8e-14 85.5 244 31.6
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 2.4e-14 85.1 708 25.8
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 2.4e-14 85.1 797 24.7
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 3.1e-14 84.7 338 31.1
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 6.9e-14 83.6 739 26.1
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 1.2e-13 82.8 445 29.0
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.2e-13 82.8 798 24.9
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.0e-13 82.0 828 27.1
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 2.0e-13 82.0 242 31.8
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 3.4e-13 81.3 718 24.4
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 3.4e-13 81.3 102 54.9
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.5e-13 80.9 817 24.6
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 4.5e-13 80.9 486 25.5
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 4.5e-13 80.9 712 23.7
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 7.7e-13 80.1 333 29.7
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 7.7e-13 80.1 709 25.8
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 1.0e-12 79.7 147 41.5
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 1.0e-12 79.7 140 42.1
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 2.2e-12 78.6 322 28.0
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 2.9e-12 78.2 311 28.6
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 3.8e-12 77.8 823 23.8
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 2.5e-11 75.1 112 46.4
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 3.2e-11 74.7 750 24.3
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 3.2e-11 74.7 73 58.9
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 5.5e-11 73.9 130 39.2
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 7.2e-11 73.6 105 44.8
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 9.4e-11 73.2 762 24.0
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 9.4e-11 73.2 277 30.7
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.6e-10 72.4 137 38.0
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 2.1e-10 72.0 70 51.4
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 6.1e-10 70.5 70 51.4
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 7.9e-10 70.1 453 26.7
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.4e-09 69.3 316 28.2
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 2.3e-09 68.6 156 32.7
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 3.0e-09 68.2 512 25.2
Duzib128G1713 Durio zibethinus HOM05D004299 ORTHO05D003557 6.7e-09 67.0 253 32.4
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.7e-09 67.0 725 23.4
Potri.001G323900 Populus trichocarpa HOM05D004299 ORTHO05D003557 6.7e-09 67.0 49 67.3
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 8.8e-09 66.6 145 33.1
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 1.5e-08 65.9 95 41.1
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 3.3e-08 64.7 291 26.5
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 7.4e-08 63.5 252 27.0
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 1.3e-07 62.8 45 64.4
Zm00001eb063140 Zea mays HOM05D021310 ORTHO05D003557 1.7e-07 62.4 62 53.2
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 2.2e-07 62.0 98 39.8
TWI60G1132 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 2.2e-07 62.0 252 30.6
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 4.8e-07 60.8 105 41.0
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 6.3e-07 60.5 120 35.8
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 8.2e-07 60.1 39 69.2
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 1.4e-06 59.3 62 48.4
SEGI_18962 Sequoiadendron giganteum HOM05D018884 ORTHO05D384929 1.4e-06 59.3 41 70.7
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.8e-06 58.9 44 63.6
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 1.8e-06 58.9 134 34.3
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 2.4e-06 58.5 460 25.2
SEGI_05410 Sequoiadendron giganteum HOM05D027683 ORTHO05D018353 4.1e-06 57.8 130 32.3
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 5.3e-06 57.4 797 25.5
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 5.3e-06 57.4 244 26.6
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 7.0e-06 57.0 45 53.3
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 7.0e-06 57.0 37 67.6
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 7.0e-06 57.0 37 67.6
Pp3c2_18130 Physcomitrium patens HOM05D027683 ORTHO05D003557 7.0e-06 57.0 63 49.2
SEGI_16647 Sequoiadendron giganteum HOM05D019055 ORTHO05D018353 9.1e-06 56.6 61 49.2


User provided reference genes

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