Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.6e-183 646.0 324 100.0
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 3.9e-166 588.2 324 92.3
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 1.3e-148 530.0 306 85.6
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 5.3e-147 524.6 324 81.5
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 1.5e-146 523.1 324 78.7
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 7.6e-146 520.8 324 81.5
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 3.5e-143 511.9 324 78.7
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 3.9e-142 508.4 324 78.7
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 2.8e-140 502.3 324 77.8
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.2e-138 496.9 324 76.9
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 1.7e-137 493.0 324 75.6
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 5.0e-137 491.5 324 76.5
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 6.5e-137 491.1 325 74.8
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 8.5e-137 490.7 324 75.9
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.9e-136 489.6 325 74.2
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.5e-136 489.2 331 76.4
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 9.4e-136 487.3 324 75.6
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.2e-135 486.9 324 75.6
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.0e-134 482.3 324 73.5
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 7.4e-133 477.6 324 72.2
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 9.7e-133 477.2 324 75.9
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.8e-131 473.0 307 75.9
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 1.8e-131 473.0 325 72.0
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 2.4e-131 472.6 326 73.6
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 9.1e-131 470.7 324 72.8
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.2e-130 470.3 324 72.8
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 3.4e-130 468.8 327 71.6
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.4e-130 468.8 324 72.5
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 3.4e-130 468.8 324 70.1
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.3e-129 466.8 324 72.2
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 1.3e-129 466.8 326 72.7
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 1.7e-129 466.5 364 65.1
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.9e-129 465.7 324 72.5
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 6.5e-129 464.5 324 71.6
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.5e-129 464.2 324 73.1
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 8.5e-129 464.2 324 72.5
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.9e-128 463.0 324 71.3
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.9e-128 463.0 324 71.9
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.2e-128 461.8 324 71.6
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 9.4e-128 460.7 338 68.9
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 9.4e-128 460.7 324 70.1
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 1.8e-126 456.4 325 69.8
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 2.3e-126 456.1 324 70.1
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 5.1e-126 454.9 326 71.8
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 6.7e-126 454.5 325 69.5
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 2.2e-124 449.5 325 68.9
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 1.1e-123 447.2 329 68.4
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 5.3e-123 444.9 324 67.9
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 5.3e-123 444.9 380 60.8
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 1.2e-122 443.7 324 66.7
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 1.5e-122 443.4 338 67.2
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 3.5e-122 442.2 324 67.9
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 3.5e-122 442.2 393 59.8
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 7.7e-122 441.0 325 69.5
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 6.5e-121 438.0 324 67.6
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.1e-120 437.2 324 65.4
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 5.5e-120 434.9 324 68.8
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 5.5e-120 434.9 324 68.8
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 4.7e-119 431.8 324 65.4
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 6.1e-119 431.4 324 67.0
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 1.0e-118 430.6 325 68.0
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 1.0e-118 430.6 325 66.8
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 3.0e-118 429.1 324 65.4
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 1.5e-117 426.8 324 67.0
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 1.5e-117 426.8 324 65.1
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 2.6e-117 426.0 324 66.7
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 4.4e-117 425.2 342 64.0
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.4e-117 425.2 325 68.0
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.7e-116 423.3 324 66.0
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 3.7e-116 422.2 326 66.6
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 6.3e-116 421.4 324 67.3
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.1e-115 420.6 325 67.7
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 5.3e-115 418.3 324 66.0
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 5.3e-115 418.3 326 66.3
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 1.2e-114 417.2 325 66.2
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 2.6e-114 416.0 365 60.0
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 3.5e-114 415.6 324 66.4
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 1.7e-113 413.3 324 65.4
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 1.9e-112 409.8 324 65.7
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 4.2e-112 408.7 324 64.5
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 4.2e-112 408.7 324 64.5
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 1.6e-111 406.8 324 65.7
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 8.0e-111 404.4 308 64.9
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 1.0e-110 404.1 325 62.8
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 2.3e-110 402.9 334 61.4
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.0e-109 399.8 327 64.5
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 3.4e-109 399.1 334 60.5
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.7e-109 398.3 315 65.4
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 7.5e-109 397.9 350 58.3
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 2.4e-107 392.9 309 65.7
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 4.5e-106 388.7 360 56.9
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.9e-106 388.3 286 73.1
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 3.8e-105 385.6 371 56.6
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.8e-105 385.6 326 61.7
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 7.2e-104 381.3 324 62.3
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 2.1e-103 379.8 284 69.0
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 1.5e-101 373.6 326 60.1
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 2.2e-100 369.8 362 56.4
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 6.3e-100 368.2 327 59.0
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 8.3e-100 367.9 326 61.0
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 5.4e-99 365.2 249 74.3
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 9.1e-99 364.4 326 59.8
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 2.7e-98 362.8 324 61.4
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 3.5e-98 362.5 326 58.0
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 3.5e-98 362.5 363 55.1
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 1.3e-97 360.5 222 79.3
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.9e-97 359.4 326 60.1
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 8.6e-97 357.8 234 72.6
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 1.5e-96 357.1 324 55.9
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.5e-96 357.1 326 59.5
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.9e-96 356.7 301 62.1
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 2.8e-95 352.8 324 55.2
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 4.9e-92 342.0 329 52.6
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.2e-90 337.4 269 63.2
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 1.2e-90 337.4 346 53.8
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 8.9e-86 321.2 325 58.5
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 9.2e-83 311.2 321 54.2
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 2.3e-78 296.6 261 60.5
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 4.0e-78 295.8 291 57.0
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.6e-77 293.1 294 58.8
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 5.4e-75 285.4 308 50.0
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 3.3e-72 276.2 208 70.2
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 2.1e-71 273.5 324 45.4
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 3.6e-71 272.7 247 54.7
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.5e-69 267.3 171 77.8
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 2.0e-69 266.9 211 65.9
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 3.0e-65 253.1 324 46.0
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 2.6e-61 240.0 145 84.8
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.4e-61 239.6 170 68.8
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.0e-57 228.0 165 70.9
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.3e-56 223.0 257 49.4
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 1.1e-51 208.0 145 73.1
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 9.3e-51 204.9 164 65.9
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.5e-50 203.0 150 64.7
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 1.9e-48 197.2 158 60.8
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 1.8e-46 190.7 128 71.9
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 2.4e-43 180.3 308 37.3
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.1e-42 177.2 340 36.2
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 1.5e-37 161.0 219 39.3
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 3.4e-37 159.8 153 55.6
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 3.2e-35 153.3 217 37.3
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.0e-33 148.3 307 33.6
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 1.3e-33 147.9 122 58.2
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 3.1e-30 136.7 84 79.8
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 5.3e-30 136.0 120 58.3
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 4.5e-29 132.9 120 56.7
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 1.0e-25 121.7 90 64.4
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 9.7e-24 115.2 96 60.4
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.3e-22 109.4 120 52.5
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 6.5e-20 102.4 84 65.5
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.5e-20 102.4 63 73.0
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 3.6e-18 96.7 75 58.7
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 7.9e-18 95.5 75 58.7
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 7.9e-18 95.5 75 58.7
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.8e-17 94.4 77 55.8
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 9.7e-16 88.6 61 75.4
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 9.1e-14 82.0 58 72.4
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 9.4e-11 72.0 61 63.9
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 1.4e-09 68.2 54 68.5
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 1.1e-06 58.5 38 73.7


User provided reference genes

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