Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.1e-257 892.9 470 100.0
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 1.1e-249 866.3 506 91.9
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 2.2e-239 832.0 470 92.6
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 5.0e-239 830.9 470 91.5
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 1.9e-238 828.9 470 91.3
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 1.9e-238 828.9 470 90.9
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 1.8e-236 822.4 469 90.4
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 5.2e-236 820.8 470 90.0
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 5.2e-236 820.8 470 90.4
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 6.8e-236 820.5 470 89.8
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.5e-235 819.3 470 90.6
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.5e-235 819.3 471 89.6
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 1.5e-235 819.3 470 91.1
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 3.4e-235 818.1 470 89.6
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 4.4e-235 817.8 470 90.0
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 7.5e-235 817.0 470 89.8
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 7.5e-235 817.0 470 90.0
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 9.8e-235 816.6 470 90.4
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.7e-234 815.8 470 89.1
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 2.8e-234 815.1 470 89.1
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 3.7e-234 814.7 470 90.2
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 1.4e-233 812.8 470 90.2
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 1.8e-233 812.4 470 89.4
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 1.8e-233 812.4 470 89.1
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 4.1e-233 811.2 470 89.8
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 9.1e-233 810.1 470 89.4
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 2.7e-232 808.5 470 89.8
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 2.7e-232 808.5 470 89.8
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 3.5e-232 808.1 469 88.5
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 3.5e-232 808.1 471 88.7
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 5.9e-232 807.4 470 89.6
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 7.7e-232 807.0 470 88.7
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.3e-231 806.2 470 87.9
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 1.3e-231 806.2 494 86.4
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 1.7e-231 805.8 469 90.0
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 2.3e-231 805.4 470 89.1
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 2.9e-231 805.1 470 87.9
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 8.6e-231 803.5 470 88.5
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 1.1e-230 803.1 507 84.0
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 1.5e-230 802.7 470 87.7
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 3.3e-230 801.6 470 86.2
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 7.2e-230 800.4 470 87.2
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 7.2e-230 800.4 469 88.9
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 1.2e-229 799.7 470 88.3
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 2.1e-229 798.9 470 87.7
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 1.4e-228 796.2 470 87.9
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 2.3e-228 795.4 471 86.8
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 4.0e-228 794.7 471 86.8
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 5.2e-228 794.3 470 87.7
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 3.4e-227 791.6 471 87.0
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 4.4e-227 791.2 469 87.6
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.3e-226 789.6 470 88.5
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 4.9e-226 787.7 471 86.8
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 6.3e-226 787.3 471 86.6
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 9.2e-225 783.5 463 87.0
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 8.6e-223 776.9 470 86.4
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.1e-222 776.5 470 85.7
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 5.6e-222 774.2 470 85.7
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 2.8e-221 771.9 470 84.9
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 6.1e-221 770.8 449 88.9
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 8.0e-221 770.4 470 84.9
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 8.0e-221 770.4 470 84.3
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 1.0e-220 770.0 470 84.9
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 1.4e-220 769.6 470 84.7
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.8e-220 769.2 470 85.3
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 4.0e-220 768.1 469 84.4
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 5.2e-220 767.7 546 76.7
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 5.2e-220 767.7 470 84.7
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 5.2e-220 767.7 470 84.7
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 3.4e-219 765.0 470 84.3
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 3.4e-219 765.0 471 84.5
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 3.4e-219 765.0 471 84.5
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 5.8e-219 764.2 469 84.2
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 9.8e-219 763.5 470 84.3
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.4e-217 759.6 469 84.0
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.8e-217 759.2 472 84.1
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 1.6e-216 756.1 494 80.6
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.3e-215 753.1 470 82.8
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 1.7e-215 752.7 498 79.9
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.7e-215 752.7 470 84.3
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 5.0e-215 751.1 470 84.0
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 6.6e-215 750.7 471 84.7
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 6.6e-215 750.7 470 81.9
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 8.9e-212 740.3 492 80.5
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 9.8e-211 736.9 471 83.0
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 5.4e-209 731.1 442 85.7
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 1.6e-208 729.6 493 78.7
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 4.7e-205 718.0 419 89.5
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 7.5e-203 710.7 419 88.3
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 7.5e-203 710.7 419 88.3
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 1.9e-201 706.1 469 82.1
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 7.8e-200 700.7 397 90.9
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 3.6e-197 691.8 422 87.0
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 3.0e-191 672.2 462 77.9
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 5.1e-191 671.4 470 73.4
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.5e-190 669.8 423 83.0
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.2e-189 664.5 470 77.0
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 1.1e-188 663.7 383 89.8
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 3.7e-173 612.1 375 85.6
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 6.2e-173 611.3 374 84.8
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 4.0e-172 608.6 353 87.5
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 7.6e-171 604.4 467 66.8
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 4.9e-170 601.7 340 92.4
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 3.9e-167 592.0 366 85.5
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 2.1e-165 586.3 470 69.4
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 4.5e-163 578.6 471 62.0
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 5.1e-159 565.1 324 92.6
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 1.1e-145 520.8 313 83.7
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.8e-135 486.9 308 85.4
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 4.4e-134 482.3 366 71.0
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.4e-127 460.7 324 78.1
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 3.3e-113 412.9 246 88.2
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.1e-92 344.7 312 64.7
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 3.7e-85 319.7 239 72.8
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 8.3e-85 318.5 174 90.2
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 8.3e-85 318.5 183 84.2
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 3.6e-80 303.1 302 56.3
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 4.7e-80 302.8 505 38.0
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.5e-73 281.2 204 62.7
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 9.9e-70 268.5 294 53.1
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 1.0e-66 258.5 160 85.6
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 4.2e-60 236.5 195 69.7
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 3.0e-58 230.3 407 41.0
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 3.3e-57 226.9 138 87.7
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 1.4e-52 211.5 119 94.1
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 5.7e-49 199.5 338 37.3
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 2.1e-48 197.6 508 30.7
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.5e-46 191.4 108 85.2
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 2.9e-45 187.2 111 90.1
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 3.2e-44 183.7 111 87.4
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.6e-43 181.4 106 84.0
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.3e-37 161.8 91 91.2
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.8e-31 141.4 76 90.8
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 5.0e-29 133.3 74 87.8
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 2.3e-26 124.4 81 77.8
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.0e-26 124.0 73 86.3
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 3.9e-26 123.6 73 84.9
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 3.9e-26 123.6 73 84.9
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 8.8e-26 122.5 75 84.0
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 2.2e-24 117.9 80 78.8
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 4.1e-23 113.6 99 62.6
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 8.5e-21 105.9 57 87.7
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 5.5e-20 103.2 57 80.7
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.6e-14 85.1 57 80.7
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 2.6e-14 84.3 52 82.7
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 1.0e-13 82.4 48 93.8
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 1.0e-13 82.4 74 60.8
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 5.0e-13 80.1 52 86.5
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 6.5e-13 79.7 43 95.3
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 7.0e-07 59.7 33 87.9


User provided reference genes

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