Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 1.1e-83 313.5 199 100.0
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 1.3e-68 263.5 200 76.0
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 3.9e-52 208.8 168 68.5
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 6.5e-47 191.4 140 72.1
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 1.5e-46 190.3 144 67.4
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 3.2e-46 189.1 141 72.3
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 1.2e-45 187.2 143 67.8
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 4.7e-45 185.3 146 67.8
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 2.3e-44 183.0 146 67.8
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.5e-43 180.3 142 64.8
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 1.3e-42 177.2 180 60.0
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 3.7e-42 175.6 141 63.8
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.8e-41 173.3 138 67.4
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 2.4e-41 172.9 143 62.9
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 4.1e-41 172.2 179 56.4
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 4.1e-41 172.2 170 56.5
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 7.0e-41 171.4 143 64.3
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 1.2e-40 170.6 144 61.1
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 1.6e-40 170.2 181 56.4
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.6e-40 170.2 180 56.7
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.6e-40 170.2 143 64.3
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 2.0e-40 169.9 180 60.6
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 4.5e-40 168.7 139 62.6
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 4.5e-40 168.7 143 64.3
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 5.9e-40 168.3 145 64.1
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 1.3e-39 167.2 142 64.1
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 3.8e-39 165.6 145 62.1
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 3.8e-39 165.6 145 62.1
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 5.0e-39 165.2 162 58.6
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 6.5e-39 164.9 198 52.0
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 1.9e-38 163.3 142 62.7
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 2.5e-38 162.9 198 51.5
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 2.5e-38 162.9 177 58.8
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 3.2e-38 162.5 146 61.6
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 3.2e-38 162.5 180 53.9
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 9.4e-38 161.0 181 56.9
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 2.1e-37 159.8 173 57.2
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 3.6e-37 159.1 144 57.6
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 4.7e-37 158.7 177 53.7
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 4.7e-37 158.7 140 62.1
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 4.7e-37 158.7 180 52.8
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 6.1e-37 158.3 146 58.2
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.4e-36 157.1 126 67.5
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 1.4e-36 157.1 180 52.8
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 2.3e-36 156.4 145 62.1
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 2.3e-36 156.4 178 52.2
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 3.0e-36 156.0 139 61.2
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 3.0e-36 156.0 154 60.4
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 4.0e-36 155.6 133 68.4
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 5.2e-36 155.2 179 52.5
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 6.8e-36 154.8 181 54.7
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 4.4e-35 152.1 114 69.3
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 4.4e-35 152.1 183 52.5
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 4.4e-35 152.1 178 52.2
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 5.7e-35 151.8 147 57.1
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.3e-34 150.6 150 60.0
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 1.3e-34 150.6 179 52.5
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 2.2e-34 149.8 179 50.3
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 2.8e-34 149.4 222 45.5
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 3.7e-34 149.1 139 60.4
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.1e-33 147.5 141 58.9
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.8e-33 146.7 142 59.9
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 2.4e-33 146.4 136 61.8
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 3.1e-33 146.0 127 62.2
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 3.1e-33 146.0 141 55.3
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 3.1e-33 146.0 137 57.7
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 5.4e-33 145.2 146 57.5
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 7.0e-33 144.8 189 49.7
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 7.0e-33 144.8 167 54.5
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 9.1e-33 144.4 142 57.0
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 9.1e-33 144.4 142 57.0
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.6e-32 143.7 139 58.3
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 2.0e-32 143.3 125 64.0
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 2.7e-32 142.9 176 49.4
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 2.7e-32 142.9 142 57.0
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 4.5e-32 142.1 147 54.4
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 4.5e-32 142.1 140 57.1
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 5.9e-32 141.7 127 62.2
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.0e-31 141.0 151 55.0
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.3e-31 140.6 170 49.4
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 2.2e-31 139.8 148 56.8
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 2.2e-31 139.8 140 55.0
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 5.0e-31 138.7 138 57.2
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 6.5e-31 138.3 136 59.6
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 6.5e-31 138.3 140 54.3
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 8.5e-31 137.9 142 59.2
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 8.5e-31 137.9 136 59.6
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 8.5e-31 137.9 136 59.6
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.1e-30 137.5 143 53.1
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 1.1e-30 137.5 132 58.3
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.5e-30 137.1 151 52.3
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 1.9e-30 136.7 115 64.3
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 1.9e-30 136.7 115 64.3
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 1.9e-30 136.7 115 64.3
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 1.9e-30 136.7 115 64.3
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 1.9e-30 136.7 115 64.3
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.9e-30 136.7 143 53.8
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 2.5e-30 136.3 139 56.1
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 3.2e-30 136.0 149 53.7
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 3.2e-30 136.0 115 64.3
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 4.2e-30 135.6 142 55.6
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 4.2e-30 135.6 142 57.0
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 9.5e-30 134.4 142 54.2
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 9.5e-30 134.4 135 54.8
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 9.5e-30 134.4 144 52.8
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 1.2e-29 134.0 134 54.5
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 1.2e-29 134.0 134 54.5
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 1.2e-29 134.0 142 54.9
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 1.6e-29 133.7 133 57.1
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 3.6e-29 132.5 140 54.3
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 3.0e-28 129.4 132 57.6
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 4.0e-28 129.0 131 56.5
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 5.2e-28 128.6 151 53.6
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 1.5e-27 127.1 118 59.3
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 2.0e-27 126.7 123 57.7
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 1.3e-26 124.0 122 53.3
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.7e-26 123.6 120 56.7
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 8.3e-26 121.3 141 51.1
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.8e-25 120.2 144 50.0
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 1.2e-24 117.5 179 43.6
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 4.5e-24 115.5 165 47.9
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 4.5e-24 115.5 163 42.9
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 5.9e-24 115.2 116 54.3
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 1.1e-22 110.9 159 45.9
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 2.1e-21 106.7 139 46.0
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 2.0e-19 100.1 102 61.8
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 5.7e-19 98.6 180 42.8
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 7.5e-19 98.2 163 43.6
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 1.3e-15 87.4 130 49.2
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 4.7e-13 79.0 148 34.5
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 1.8e-12 77.0 109 46.8
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 6.8e-12 75.1 120 46.7
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 8.9e-12 74.7 128 38.3
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.3e-10 70.9 132 37.1
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 2.9e-10 69.7 72 54.2
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 3.7e-10 69.3 151 33.1
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 8.3e-10 68.2 101 49.5
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 1.9e-09 67.0 141 34.8
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 2.4e-09 66.6 190 29.5
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 4.6e-08 62.4 180 30.6
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 4.6e-08 62.4 61 50.8
Duzib170G0487 Durio zibethinus HOM05D004872 ORTHO05D006050 1.7e-07 60.5 40 65.0
AL225U10020 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 8.6e-07 58.2 70 51.4


User provided reference genes

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