Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 6.1e-183 644.0 332 100.0
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 9.2e-179 630.2 330 97.9
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 5.6e-168 594.3 332 91.6
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 7.3e-168 594.0 325 93.2
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 2.8e-167 592.0 326 92.0
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 2.8e-167 592.0 332 91.6
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 8.0e-167 590.5 330 90.9
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 8.0e-167 590.5 326 91.7
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 1.4e-166 589.7 332 91.3
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.4e-166 589.7 327 91.7
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 2.3e-166 589.0 332 90.4
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 8.9e-166 587.0 326 91.1
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 8.9e-166 587.0 327 92.0
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.5e-165 586.3 330 90.9
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 5.8e-165 584.3 326 91.4
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 2.2e-164 582.4 325 92.3
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 2.2e-164 582.4 325 92.3
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 2.2e-164 582.4 326 90.8
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 2.9e-164 582.0 326 90.5
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 3.7e-164 581.6 326 90.2
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 1.9e-163 579.3 327 90.8
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 4.1e-163 578.2 326 90.5
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 7.0e-163 577.4 332 88.9
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 9.2e-163 577.0 332 90.4
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 1.6e-162 576.2 332 88.6
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 3.5e-162 575.1 326 89.9
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 7.8e-162 573.9 332 88.3
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 1.7e-161 572.8 332 87.7
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 3.0e-161 572.0 332 87.3
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 3.9e-161 571.6 332 87.3
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 1.9e-160 569.3 332 87.7
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 9.5e-160 567.0 332 85.8
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 9.5e-160 567.0 326 88.0
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 1.6e-159 566.2 332 87.3
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 2.1e-159 565.8 330 87.3
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 2.1e-159 565.8 332 85.8
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 2.1e-159 565.8 332 88.6
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 2.1e-159 565.8 332 87.0
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.1e-159 565.8 326 87.7
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.6e-159 565.1 332 87.3
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 4.7e-159 564.7 332 85.5
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 6.2e-159 564.3 329 86.9
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 6.2e-159 564.3 332 85.2
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 1.4e-158 563.1 333 85.3
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 1.4e-158 563.1 332 85.2
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 1.4e-158 563.1 332 86.7
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.8e-158 562.8 330 85.8
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.8e-158 562.8 330 85.8
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 3.1e-158 562.0 332 86.1
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 4.0e-158 561.6 330 85.5
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 4.0e-158 561.6 363 82.6
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 4.0e-158 561.6 325 86.8
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 4.0e-158 561.6 332 86.4
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 5.2e-158 561.2 332 86.7
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 6.8e-158 560.8 326 86.5
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 6.8e-158 560.8 330 85.5
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 1.5e-157 559.7 325 87.7
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 2.0e-157 559.3 338 85.8
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 2.0e-157 559.3 333 85.0
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 2.6e-157 558.9 329 85.7
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 3.4e-157 558.5 329 85.1
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 9.9e-157 557.0 332 86.1
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 1.3e-156 556.6 326 85.9
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 1.3e-156 556.6 325 87.4
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 1.3e-156 556.6 325 87.4
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.7e-156 556.2 332 84.6
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 2.2e-156 555.8 332 84.9
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 2.2e-156 555.8 386 77.2
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 2.9e-156 555.4 324 88.9
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 2.9e-156 555.4 326 85.6
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 3.7e-156 555.1 331 86.1
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 4.9e-156 554.7 326 85.6
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 8.3e-156 553.9 331 84.0
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 8.3e-156 553.9 326 85.3
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.1e-155 553.5 326 85.3
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.1e-155 553.5 326 85.3
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.1e-155 553.5 326 85.3
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.1e-155 553.5 326 85.3
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 1.9e-155 552.7 330 84.5
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 2.4e-155 552.4 330 84.2
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 2.4e-155 552.4 330 84.5
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 3.2e-155 552.0 359 79.7
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 9.2e-155 550.4 326 84.7
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 9.2e-155 550.4 326 85.0
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 1.3e-153 546.6 330 83.9
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 1.1e-152 543.5 331 83.7
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.9e-152 542.7 331 83.1
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.9e-152 542.7 314 86.6
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 3.3e-152 542.0 455 66.6
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 1.6e-151 539.7 328 83.2
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 4.7e-151 538.1 328 82.9
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 6.2e-151 537.7 326 83.4
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.2e-149 533.5 331 82.2
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.5e-149 533.1 331 82.2
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 4.9e-148 528.1 303 87.8
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 2.7e-146 522.3 327 82.3
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 8.6e-145 517.3 331 81.3
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 9.6e-144 513.8 330 80.3
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 1.2e-143 513.5 332 82.8
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 4.7e-143 511.5 329 79.0
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 6.2e-143 511.1 300 85.7
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 2.6e-141 505.8 330 79.1
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 2.5e-136 489.2 332 78.9
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.6e-135 486.5 302 83.8
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 4.8e-135 485.0 326 74.2
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 1.4e-134 483.4 335 73.1
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.1e-134 482.3 377 70.0
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 2.9e-132 475.7 326 77.3
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 4.2e-131 471.9 326 72.7
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 6.7e-129 464.5 331 74.6
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 7.4e-128 461.1 333 75.1
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.3e-127 460.3 279 83.2
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 2.2e-116 422.9 323 70.3
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 3.0e-113 412.5 234 88.9
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 4.1e-110 402.1 324 60.2
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 5.9e-109 398.3 318 63.2
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.0e-108 397.5 233 86.3
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 1.7e-108 396.7 326 63.8
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 8.7e-105 384.4 318 65.4
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 2.8e-103 379.4 271 73.1
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 4.1e-94 349.0 331 62.2
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 1.2e-93 347.4 197 90.9
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 5.0e-92 342.0 229 76.9
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 4.7e-90 335.5 240 69.6
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 2.3e-89 333.2 332 59.3
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 3.7e-87 325.9 220 79.1
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 2.0e-85 320.1 220 77.3
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 3.0e-81 306.2 167 91.6
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 7.5e-80 301.6 220 75.0
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 1.9e-75 287.0 333 45.3
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 1.5e-72 277.3 165 86.7
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.1e-70 271.2 165 83.0
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 5.0e-68 262.3 326 51.5
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 8.9e-65 251.5 267 55.4
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 4.1e-62 242.7 135 89.6
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 8.9e-57 224.9 129 88.4
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 8.6e-44 181.8 159 63.5
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.3e-43 179.9 103 84.5
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 4.3e-43 179.5 207 50.7
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 2.2e-39 167.2 181 55.8
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 3.2e-38 163.3 103 83.5
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 6.0e-37 159.1 92 89.1
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 9.5e-35 151.8 87 83.9
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 7.6e-32 142.1 77 93.5
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 6.4e-31 139.0 91 82.4
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 6.4e-31 139.0 88 77.3
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 5.4e-30 136.0 69 91.3
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 3.5e-29 133.3 74 87.8
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 6.0e-29 132.5 80 80.0
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 9.6e-27 125.2 91 71.4
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.7e-23 114.4 75 74.7
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 2.2e-23 114.0 72 81.9
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 1.9e-22 110.9 67 86.6
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 3.2e-22 110.2 69 79.7
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 2.5e-19 100.5 65 81.5
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 4.3e-11 73.2 85 52.9
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 1.3e-07 61.6 48 66.7
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 2.9e-07 60.5 76 44.7


User provided reference genes

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