Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 4.7e-111 404.4 191 100.0
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 4.6e-106 387.9 191 95.8
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 1.7e-105 386.0 191 95.8
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 1.7e-105 386.0 191 95.8
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 1.7e-105 386.0 191 95.8
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 3.9e-105 384.8 191 95.3
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 5.0e-105 384.4 191 95.3
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 1.9e-104 382.5 191 94.8
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 7.3e-104 380.6 191 94.8
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 7.3e-104 380.6 191 94.8
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 1.6e-103 379.4 191 94.2
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 2.8e-103 378.6 191 94.2
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 3.6e-103 378.3 191 93.7
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 6.2e-103 377.5 191 93.7
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 6.2e-103 377.5 191 94.2
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 6.2e-103 377.5 191 94.2
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 6.2e-103 377.5 191 94.2
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 1.8e-102 375.9 191 93.2
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 2.3e-102 375.6 191 94.2
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 2.3e-102 375.6 191 94.2
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.6e-101 372.1 188 93.1
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 7.5e-101 370.5 191 92.7
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.3e-100 369.8 184 95.1
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.7e-100 369.4 188 92.0
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 2.9e-100 368.6 189 93.1
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 3.7e-100 368.2 191 92.1
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 4.1e-99 364.8 191 91.6
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 4.1e-99 364.8 191 91.6
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.5e-98 361.7 188 91.5
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 4.6e-98 361.3 191 91.6
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 1.9e-96 355.9 191 90.1
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 3.3e-96 355.1 170 99.4
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.6e-95 352.8 179 93.3
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 3.6e-95 351.7 188 87.8
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 4.7e-95 351.3 191 88.5
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 1.4e-94 349.7 191 88.0
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 1.3e-92 343.2 189 88.4
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 2.9e-92 342.0 170 95.9
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 5.4e-91 337.8 170 94.7
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 5.4e-91 337.8 170 94.7
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 7.1e-91 337.4 167 95.8
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 1.6e-90 336.3 170 94.7
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 3.5e-90 335.1 186 86.0
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 3.5e-90 335.1 186 86.0
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 1.0e-89 333.6 170 93.5
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 8.6e-89 330.5 170 93.5
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 5.6e-88 327.8 170 92.9
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 5.6e-88 327.8 170 92.9
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 7.3e-88 327.4 168 93.5
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 3.6e-87 325.1 170 91.2
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 4.7e-87 324.7 168 92.9
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-86 323.6 177 88.1
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 1.4e-86 323.2 170 91.8
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 1.8e-86 322.8 170 91.8
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 3.1e-86 322.0 166 92.8
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 2.6e-85 318.9 185 82.7
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 3.4e-85 318.5 165 92.1
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-84 316.6 163 92.0
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 2.4e-83 312.4 166 89.8
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 1.2e-82 310.1 170 88.2
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 4.6e-82 308.1 161 90.1
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 2.3e-81 305.8 191 78.0
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 3.0e-81 305.4 191 80.1
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 3.9e-81 305.1 179 82.7
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 3.9e-81 305.1 165 88.5
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-80 302.4 177 81.9
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 8.1e-79 297.4 166 85.5
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-78 296.6 164 86.6
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 4.4e-77 291.6 164 86.0
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 7.6e-77 290.8 169 84.0
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 1.9e-75 286.2 170 82.4
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 3.2e-75 285.4 188 72.9
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 3.5e-74 282.0 141 95.7
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 3.5e-74 282.0 141 95.7
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 3.3e-72 275.4 167 82.6
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 4.3e-72 275.0 153 87.6
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-70 270.0 138 93.5
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.2e-69 266.9 135 94.1
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-68 262.7 135 91.9
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-66 256.5 138 89.1
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-66 256.5 138 89.1
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-66 256.1 155 81.9
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 6.0e-66 254.6 142 85.9
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-65 252.7 132 90.2
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 9.6e-64 247.3 131 89.3
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 9.6e-64 247.3 138 85.5
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 1.2e-61 240.4 172 74.4
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 2.9e-60 235.7 136 84.6
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 3.8e-60 235.3 199 64.3
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.8e-60 235.3 124 91.1
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 1.2e-58 230.3 199 63.8
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 3.5e-58 228.8 136 82.4
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-56 223.8 138 81.9
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-56 223.0 135 83.0
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-56 222.6 127 84.3
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 5.8e-53 211.5 114 87.7
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 3.8e-52 208.8 114 88.6
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 1.9e-51 206.5 99 97.0
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 3.2e-51 205.7 109 89.9
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 3.2e-51 205.7 185 60.5
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 4.2e-51 205.3 148 70.9
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 1.2e-50 203.8 100 95.0
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 2.3e-49 199.5 153 60.8
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 5.1e-49 198.4 97 94.8
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 8.7e-49 197.6 96 95.8
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 8.7e-49 197.6 99 93.9
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 8.7e-49 197.6 115 84.3
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 5.7e-48 194.9 146 59.6
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 9.6e-48 194.1 109 86.2
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.3e-47 193.7 101 90.1
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 2.8e-47 192.6 103 89.3
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 5.3e-46 188.3 100 88.0
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.8e-44 182.2 102 85.3
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 9.3e-43 177.6 96 87.5
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 1.2e-42 177.2 99 84.8
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-42 176.4 94 88.3
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 4.3e-40 168.7 106 78.3
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 4.3e-40 168.7 143 61.5
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 5.7e-40 168.3 79 96.2
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 2.4e-38 162.9 89 87.6
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 5.3e-38 161.8 87 85.1
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 5.3e-38 161.8 87 85.1
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 3.4e-37 159.1 172 51.7
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-36 157.5 132 62.1
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 3.8e-36 155.6 129 64.3
CAN.G134.23 Capsicum annuum HOM05D001560 ORTHO05D004675 1.2e-34 150.6 74 94.6
Gohir.A03G134200 Gossypium hirsutum HOM05D001560 ORTHO05D004675 1.2e-34 150.6 74 94.6
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-34 150.6 81 85.2
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 7.9e-34 147.9 74 90.5
Zm00001eb436070 Zea mays HOM05D001560 ORTHO05D004675 7.9e-34 147.9 74 93.2
Zm00001eb440310 Zea mays HOM05D001560 ORTHO05D004675 7.9e-34 147.9 74 93.2
Zm00001eb440380 Zea mays HOM05D001560 ORTHO05D004675 7.9e-34 147.9 74 93.2
Zm00001eb442180 Zea mays HOM05D001560 ORTHO05D004675 7.9e-34 147.9 74 93.2
AUR62042344 Chenopodium quinoa HOM05D001560 ORTHO05D004675 1.8e-33 146.7 71 94.4
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.3e-33 146.4 149 55.0
SHI36081 Sapria himalayana HOM05D001560 ORTHO05D004675 6.7e-33 144.8 74 89.2
SHI36375 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-32 143.7 74 89.2
SMO053G0006 Selaginella moellendorffii HOM05D001560 ORTHO05D004675 2.6e-32 142.9 175 44.6
SHI38033 Sapria himalayana HOM05D001560 ORTHO05D004675 3.3e-32 142.5 74 89.2
SHI40902 Sapria himalayana HOM05D001560 ORTHO05D004675 4.4e-32 142.1 74 87.8
SHI39123 Sapria himalayana HOM05D001560 ORTHO05D004675 5.7e-32 141.7 74 87.8
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 3.7e-31 139.0 68 92.6
SHI36939 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-31 139.0 72 88.9
SHI36627 Sapria himalayana HOM05D001560 ORTHO05D004675 6.3e-31 138.3 70 90.0
Nitab4.5_0013170g0020 Nicotiana tabacum HOM05D001560 ORTHO05D004675 8.2e-31 137.9 72 88.9
SHI43451 Sapria himalayana HOM05D001560 ORTHO05D004675 8.2e-31 137.9 74 86.5
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 8.2e-31 137.9 86 76.7
SHI34635 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-30 136.0 72 86.1
SHI38213 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-29 133.7 74 85.1
SHI34631 Sapria himalayana HOM05D001560 ORTHO05D004675 3.4e-29 132.5 74 85.1
Nitab4.5_0001127g0220 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.0e-28 131.0 74 82.4
SHI27346 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-28 131.0 71 85.9
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-28 130.6 124 59.7
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-28 130.6 124 59.7
SHI38099 Sapria himalayana HOM05D001560 ORTHO05D004675 6.5e-28 128.3 74 82.4
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 6.5e-28 128.3 92 70.7
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 2.6e-24 116.3 57 93.0
Nitab4.5_0000661g0100 Nicotiana tabacum HOM05D001560 ORTHO05D004675 7.4e-24 114.8 64 84.4
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 3.7e-23 112.5 69 79.7
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 5.9e-21 105.1 70 78.6
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 3.8e-20 102.4 51 92.2
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 5.0e-20 102.1 61 85.2
CsaV3_5G015880 Cucumis sativus L. HOM05D001560 ORTHO05D004675 1.0e-17 94.4 49 87.8
SHI35323 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-17 94.0 58 77.6
SHI44216 Sapria himalayana HOM05D001560 ORTHO05D004675 3.0e-17 92.8 69 68.1
Nitab4.5_0019346g0010 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.2e-16 90.9 44 95.5
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-15 86.7 111 47.7
SHI38481 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-12 77.4 181 33.7
Nitab4.5_0001152g0580 Nicotiana tabacum HOM05D001560 ORTHO05D004675 6.5e-12 75.1 50 68.0
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 4.2e-11 72.4 48 72.9
EL10Ac7g17432 Beta vulgaris HOM05D001560 ORTHO05D004675 1.2e-08 64.3 35 82.9
SHI35288 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-08 63.2 34 82.4
Nitab4.5_0003709g0080 Nicotiana tabacum HOM05D012582 ORTHO05D011721 1.7e-07 60.5 30 90.0
DCAR_022732 Daucus carota HOM05D001560 ORTHO05D004675 2.2e-07 60.1 30 86.7
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-07 59.3 51 56.9
Medtr8g059730 Medicago truncatula HOM05D001560 ORTHO05D004675 1.4e-06 57.4 48 54.2
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 5.4e-06 55.5 60 45.0
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 7.0e-06 55.1 97 36.1
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 7.0e-06 55.1 97 36.1
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 7.0e-06 55.1 97 36.1


User provided reference genes

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