Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 2.1e-118 429.1 226 100.0
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.7e-115 419.5 224 97.3
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.7e-99 365.2 218 86.2
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 4.7e-94 348.2 219 79.9
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 3.4e-92 342.0 217 81.6
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 9.9e-92 340.5 217 81.6
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 6.4e-91 337.8 219 78.5
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.4e-90 336.7 217 80.2
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.7e-89 332.4 216 80.1
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.7e-89 332.4 216 79.6
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 3.5e-89 332.0 216 79.6
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 8.6e-88 327.4 218 77.1
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.5e-87 326.6 220 75.9
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 9.6e-87 323.9 219 76.7
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 2.8e-86 322.4 220 73.6
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 5.2e-85 318.2 220 72.3
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.5e-84 316.6 220 72.3
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 9.9e-84 313.9 215 74.0
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.7e-83 313.2 221 72.4
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.9e-83 312.4 221 72.4
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 2.9e-83 312.4 218 73.4
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 6.4e-83 311.2 222 73.0
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.4e-83 311.2 215 73.5
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.1e-82 310.5 215 72.6
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.4e-82 310.1 220 71.8
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.9e-82 309.7 221 71.9
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 3.2e-82 308.9 224 70.5
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 4.2e-82 308.5 221 72.9
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 4.2e-82 308.5 220 71.4
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 9.3e-82 307.4 221 71.5
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 9.3e-82 307.4 220 70.9
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.7e-81 305.8 220 71.4
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 3.5e-81 305.4 222 69.8
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.3e-80 303.5 223 70.9
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.0e-80 302.4 223 70.4
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 3.9e-80 302.0 222 69.4
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 8.7e-80 300.8 228 70.2
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 8.7e-80 300.8 215 70.2
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.5e-79 300.1 221 70.6
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.9e-79 299.7 214 71.5
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 1.3e-78 297.0 225 69.3
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 1.6e-78 296.6 219 70.8
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 8.1e-78 294.3 224 68.8
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.4e-77 292.7 220 67.3
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 2.4e-77 292.7 221 69.2
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 5.3e-77 291.6 222 67.1
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 6.9e-77 291.2 217 66.8
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 6.9e-77 291.2 215 67.0
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 9.0e-77 290.8 220 66.8
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 1.2e-76 290.4 221 70.6
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.5e-76 290.0 219 67.6
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.5e-76 290.0 223 68.6
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 2.0e-76 289.7 213 67.6
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 4.4e-76 288.5 210 69.0
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 5.8e-76 288.1 220 66.4
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 7.6e-76 287.7 218 69.3
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 9.9e-76 287.3 226 65.0
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.3e-75 287.0 220 67.7
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 1.7e-75 286.6 220 67.3
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.7e-75 286.6 223 68.2
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.7e-75 286.6 215 67.0
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 2.2e-75 286.2 220 67.3
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.9e-75 285.8 228 64.0
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.9e-75 285.8 235 63.0
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 4.9e-75 285.0 223 68.6
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-74 283.9 220 65.9
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.1e-74 283.9 220 65.9
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 1.1e-74 283.9 213 66.2
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.1e-74 283.9 220 65.5
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.9e-74 283.1 232 62.9
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 3.2e-74 282.3 220 66.4
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 4.2e-74 282.0 216 67.6
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 5.4e-74 281.6 219 63.9
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 7.1e-74 281.2 220 65.5
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 9.3e-74 280.8 226 64.2
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.2e-73 280.4 228 63.2
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 1.6e-73 280.0 220 65.0
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-73 280.0 221 66.1
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.7e-73 279.3 221 66.5
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 4.6e-73 278.5 218 66.5
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 7.9e-73 277.7 232 61.6
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 7.9e-73 277.7 230 62.2
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.0e-72 277.3 221 66.1
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.3e-72 276.9 227 63.0
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.7e-72 276.6 221 66.1
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.3e-72 276.2 220 65.9
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 2.3e-72 276.2 224 61.6
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.0e-72 275.8 220 65.0
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.5e-71 272.7 216 66.7
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 7.3e-71 271.2 223 64.1
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 9.6e-71 270.8 220 64.5
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.1e-70 269.6 220 64.1
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 2.1e-70 269.6 221 65.6
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.1e-69 267.3 224 61.6
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 6.9e-69 264.6 221 63.8
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 6.9e-69 264.6 221 63.3
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 2.2e-67 259.6 221 60.6
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 4.9e-67 258.5 225 58.7
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 6.4e-67 258.1 217 65.0
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 1.1e-66 257.3 220 60.9
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.4e-66 256.9 228 57.9
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.2e-65 253.8 214 62.1
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 2.1e-65 253.1 253 56.9
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 2.7e-65 252.7 219 60.3
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 3.5e-65 252.3 219 59.8
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.8e-64 250.0 221 59.3
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 8.7e-64 247.7 271 52.0
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 4.3e-63 245.4 227 55.5
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 6.2e-62 241.5 172 70.3
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 2.4e-61 239.6 220 56.8
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 5.3e-61 238.4 183 63.9
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.5e-60 235.3 220 59.5
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 7.6e-60 234.6 220 55.5
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 4.9e-59 231.9 170 69.4
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 6.5e-59 231.5 170 68.8
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 1.4e-58 230.3 154 74.7
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.2e-57 227.3 220 57.3
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.9e-55 219.9 241 49.8
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 7.4e-55 218.0 159 69.2
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.4e-53 213.8 158 69.6
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.8e-53 213.4 237 49.8
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 2.2e-51 206.5 157 70.7
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.1e-50 204.1 161 68.9
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 1.9e-50 203.4 220 50.5
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.2e-50 202.2 135 77.8
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 9.3e-50 201.1 221 53.8
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 1.7e-43 180.3 141 66.7
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.4e-42 177.2 120 73.3
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 6.1e-41 171.8 223 45.7
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 9.7e-39 164.5 187 48.7
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 9.7e-39 164.5 134 64.2
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.2e-38 163.3 193 47.2
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.8e-38 162.2 219 43.8
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 2.0e-36 156.8 215 42.8
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 1.2e-33 147.5 126 64.3
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.1e-33 146.7 187 45.5
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 7.9e-33 144.8 118 66.1
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.0e-32 144.4 118 66.9
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.4e-32 144.1 113 68.1
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.3e-31 139.4 145 54.5
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.3e-31 139.4 140 57.9
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 3.3e-31 139.4 228 39.5
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 7.4e-31 138.3 183 47.0
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 3.1e-29 132.9 90 76.7
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 5.3e-29 132.1 221 36.2
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 4.7e-25 119.0 142 49.3
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 4.7e-25 119.0 183 47.5
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.3e-24 116.7 181 39.8
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 2.3e-24 116.7 215 35.3
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.0e-24 116.3 79 67.1
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.0e-24 116.3 79 67.1
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 2.0e-23 113.6 217 35.9
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 3.1e-21 106.3 150 44.7
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 7.0e-21 105.1 90 58.9
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 1.3e-19 100.9 106 48.1
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.2e-19 100.1 80 62.5
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 5.5e-18 95.5 114 51.8
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.2e-17 94.4 175 38.3
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 1.6e-17 94.0 205 35.6
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 1.6e-17 94.0 205 35.6
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.7e-17 93.2 70 68.6
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.0e-16 91.3 75 65.3
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 1.8e-16 90.5 153 38.6
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 1.8e-16 90.5 82 57.3
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 8.8e-16 88.2 80 51.2
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 1.2e-15 87.8 87 54.0
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.2e-15 87.8 95 47.4
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 1.8e-13 80.5 86 48.8
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 3.1e-13 79.7 49 77.6
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 3.1e-13 79.7 49 77.6
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 4.1e-13 79.3 49 77.6
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 4.1e-13 79.3 49 77.6
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 1.6e-12 77.4 192 33.3
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.6e-12 77.4 51 70.6
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 2.2e-11 73.6 48 75.0
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 5.0e-11 72.4 77 54.5
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.1e-10 71.2 77 55.8
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 5.5e-10 68.9 80 45.0
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 8.0e-09 65.1 56 66.1
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 2.6e-07 60.1 52 55.8
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 3.4e-07 59.7 41 73.2
Medtr1g102820 Medicago truncatula HOM05D003667 ORTHO05D004397 1.7e-06 57.4 57 50.9
Oeu032224.2 Olea europaea HOM05D003667 ORTHO05D004397 8.3e-06 55.1 44 63.6


User provided reference genes

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