Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G058601 Populus trichocarpa HOM05D003255 ORTHO05D003705 9.3e-36 152.9 72 100.0
Potri.019G034100 Populus trichocarpa HOM05D003255 ORTHO05D003705 5.5e-28 127.1 71 80.3
Sabra19G0042000 Salix brachista HOM05D003255 ORTHO05D003705 5.5e-28 127.1 71 80.3
DCAR_013690 Daucus carota HOM05D003255 ORTHO05D003705 8.2e-24 113.2 71 69.0
Cfa016436 Carpinus fangiana HOM05D003255 ORTHO05D003705 1.1e-23 112.8 71 73.2
CiPaw.10G000800 Carya illinoinensis HOM05D003255 ORTHO05D003705 3.1e-23 111.3 71 70.4
Prupe.3G114100 Prunus persica HOM05D003255 ORTHO05D003705 2.0e-22 108.6 71 67.6
Haze_19413 Corylus avellana HOM05D003255 ORTHO05D003705 2.6e-22 108.2 72 72.2
Dinv14582 Davidia involucrata HOM05D003255 ORTHO05D003705 2.6e-22 108.2 71 67.6
Manes.09G141900 Manihot esculenta HOM05D003255 ORTHO05D003705 2.6e-22 108.2 71 70.4
vmacro12569 Vaccinium macrocarpon HOM05D003255 ORTHO05D003705 5.8e-22 107.1 71 64.8
Rhsim09G0004800 Rhododendron simsii HOM05D003255 ORTHO05D003705 1.0e-21 106.3 71 64.8
Cpa.g.sc51.109 Carica papaya HOM05D003255 ORTHO05D003705 1.7e-21 105.5 71 71.8
CAN.G317.15 Capsicum annuum HOM05D003255 ORTHO05D003705 5.0e-21 104.0 71 59.2
Actinidia22086 Actinidia chinensis HOM05D003255 ORTHO05D003705 6.5e-21 103.6 71 64.8
Cc06_g22890 Coffea canephora HOM05D003255 ORTHO05D003705 6.5e-21 103.6 71 63.4
Peaxi162Scf00076g01039 Petunia axillaris HOM05D003255 ORTHO05D003705 8.4e-21 103.2 71 59.2
MD17G1264700 Malus domestica HOM05D003255 ORTHO05D003705 1.1e-20 102.8 71 62.0
Hma1.2p1_0152F.1_g067770 Hydrangea macrophylla HOM05D003255 ORTHO05D003705 1.4e-20 102.4 71 64.8
Nitab4.5_0000001g0080 Nicotiana tabacum HOM05D003255 ORTHO05D003705 1.4e-20 102.4 71 59.2
Nitab4.5_0002825g0020 Nicotiana tabacum HOM05D003255 ORTHO05D003705 1.4e-20 102.4 71 59.2
Sopen03g015030 Solanum pennellii HOM05D003255 ORTHO05D003705 1.4e-20 102.4 71 57.7
PGSC0003DMG400008639 Solanum tuberosum HOM05D003255 ORTHO05D003705 1.4e-20 102.4 71 57.7
Solyc03g062720.3 Solanum lycopersicum HOM05D003255 ORTHO05D003705 1.9e-20 102.1 71 57.7
GSVIVG01033393001 Vitis vinifera HOM05D003255 ORTHO05D003705 1.9e-20 102.1 71 63.4
MELO3C026889.2 Cucumis melo HOM05D003255 ORTHO05D003705 3.2e-20 101.3 71 63.4
unitig_746.g26891 Utricularia gibba HOM05D000423 ORTHO05D000284 4.2e-20 100.9 71 59.2
Eucgr.K01497 Eucalyptus grandis HOM05D003255 ORTHO05D003705 7.1e-20 100.1 71 67.6
HanXRQChr02g0054161 Helianthus annuus HOM05D003255 ORTHO05D003705 7.1e-20 100.1 71 62.0
PGR142G0348 Punica granatum HOM05D003255 ORTHO05D003705 9.3e-20 99.8 71 63.4
RcHm_v2.0_Chr2g0130821 Rosa chinensis HOM05D003255 ORTHO05D003705 9.3e-20 99.8 61 72.1
Actinidia30555 Actinidia chinensis HOM05D003255 ORTHO05D003705 1.2e-19 99.4 69 62.3
FvH4_6g27680 Fragaria vesca HOM05D003255 ORTHO05D003705 1.6e-19 99.0 61 72.1
FAN02G2038 Fragaria x ananassa HOM05D003255 ORTHO05D006458 1.6e-19 99.0 61 72.1
FAN05G4616 Fragaria x ananassa HOM05D003255 ORTHO05D003705 1.6e-19 99.0 61 72.1
FAN09G1185 Fragaria x ananassa HOM05D003255 ORTHO05D003705 1.6e-19 99.0 61 72.1
FAN14G1820 Fragaria x ananassa HOM05D003255 ORTHO05D003705 1.6e-19 99.0 61 72.1
Lj1A1137T81 Lonicera japonica HOM05D003255 ORTHO05D003705 2.1e-19 98.6 71 60.6
Sed0025392 Sechium edule HOM05D003255 ORTHO05D003705 2.1e-19 98.6 71 62.0
CsaV3_3G043290 Cucumis sativus L. HOM05D003255 ORTHO05D003705 2.7e-19 98.2 71 62.0
ECA233G1992 Erigeron canadensis HOM05D003255 ORTHO05D003705 4.6e-19 97.4 71 62.0
Lsat_1_v5_gn_6_36921 Lactuca sativa HOM05D003255 ORTHO05D003705 4.6e-19 97.4 71 60.6
QL07p019702 Quercus lobata HOM05D003255 ORTHO05D003705 7.9e-19 96.7 71 60.6
Ah.04g153230 Amaranthus hybridus HOM05D003255 ORTHO05D003705 1.3e-18 95.9 71 59.2
CANSAT78G2239 Cannabis sativa HOM05D003255 ORTHO05D003705 1.3e-18 95.9 62 71.0
Medtr7g085490 Medicago truncatula HOM05D003255 ORTHO05D003705 1.3e-18 95.9 71 57.7
CDE05G3425 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 1.8e-18 95.5 71 59.2
CDE02G4790 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 2.3e-18 95.1 71 57.7
Oeu012405.1 Olea europaea HOM05D003255 ORTHO05D003705 3.0e-18 94.7 71 54.9
arahy.Tifrunner.gnm1.ann1.G0TJBI Arachis hypogaea HOM05D003255 ORTHO05D003705 5.1e-18 94.0 70 60.0
arahy.Tifrunner.gnm1.ann1.1MDK5L Arachis hypogaea HOM05D003255 ORTHO05D003705 6.7e-18 93.6 70 60.0
Phvul.001G110100 Phaseolus vulgaris HOM05D003255 ORTHO05D003705 6.7e-18 93.6 68 60.3
Hund24838 Selenicereus undatus HOM05D003255 ORTHO05D003705 6.7e-18 93.6 71 54.9
VMungo1383G0405 Vigna mungo HOM05D003255 ORTHO05D003705 6.7e-18 93.6 68 60.3
Thecc.05G293900 Theobroma cacao HOM05D003255 ORTHO05D003705 8.7e-18 93.2 61 68.9
EL10Ac3g06815 Beta vulgaris HOM05D003255 ORTHO05D003705 1.1e-17 92.8 71 57.7
Atru.chr2.1363 Acer truncatum HOM05D003255 ORTHO05D003705 1.9e-17 92.0 71 63.4
Lalb_Chr22g0359271 Lupinus albus HOM05D003255 ORTHO05D003705 1.9e-17 92.0 71 56.3
TPR.G5890 Trifolium pratense HOM05D003255 ORTHO05D003705 1.9e-17 92.0 71 54.9
COL.COLO4_13607 Corchorus olitorius HOM05D003255 ORTHO05D003705 2.5e-17 91.7 71 64.8
Ca_08260_v3 Cicer arietinum L. HOM05D003255 ORTHO05D003705 3.3e-17 91.3 71 54.9
Glyma.19G110700 Glycine max HOM05D003255 ORTHO05D003705 3.3e-17 91.3 68 60.3
Migut.J01892 Erythranthe guttata HOM05D003255 ORTHO05D003705 4.3e-17 90.9 68 55.9
Gohir.D11G268900 Gossypium hirsutum HOM05D003255 ORTHO05D003705 5.7e-17 90.5 71 62.0
Gorai.007G288700 Gossypium raimondii HOM05D003255 ORTHO05D003705 5.7e-17 90.5 71 62.0
Nn7g35822 Nelumbo nucifera HOM05D003255 ORTHO05D003705 5.7e-17 90.5 71 57.7
Psat3g089080 Pisum sativum HOM05D003255 ORTHO05D003705 9.7e-17 89.7 71 54.9
THA.LOC104805763 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 9.7e-17 89.7 61 63.9
THA.LOC104814754 Tarenaya hassleriana HOM05D003255 ORTHO05D003705 9.7e-17 89.7 61 63.9
Lj1g0023757 Lotus japonicus HOM05D003255 ORTHO05D003705 1.3e-16 89.4 68 57.4
Glyma.16G041700 Glycine max HOM05D003255 ORTHO05D003705 2.8e-16 88.2 68 58.8
TWI32G0868 Tripterygium wilfordii HOM05D003255 ORTHO05D003705 2.8e-16 88.2 61 65.6
Gohir.A11G258800 Gossypium hirsutum HOM05D003255 ORTHO05D003705 4.8e-16 87.4 71 60.6
SalBow6G7123 Salvia bowleyana HOM05D003255 ORTHO05D003705 4.8e-16 87.4 71 54.9
PSO384G0936 Papaver somniferum HOM05D003255 ORTHO05D003705 1.1e-15 86.3 71 53.5
Ciclev10020997m.g Citrus clementina HOM05D003255 ORTHO05D003705 3.1e-15 84.7 56 64.3
TPR.G39773 Trifolium pratense HOM05D003255 ORTHO05D003705 5.3e-15 84.0 63 57.1
Aqoxy2G00585 Aquilegia oxysepala HOM05D003255 ORTHO05D003705 1.2e-14 82.8 71 53.5
Thhalv10018808m.g Eutrema salsugineum HOM05D003255 ORTHO05D003705 1.5e-14 82.4 71 53.5
PSO339G4182 Papaver somniferum HOM05D003255 ORTHO05D003705 1.5e-14 82.4 71 52.1
BcaC02g10774 Brassica carinata HOM05D003255 ORTHO05D003705 2.0e-14 82.0 61 57.4
C04p25200 Brassica napus HOM05D003255 ORTHO05D003705 2.0e-14 82.0 61 57.4
Sp2g07380 Schrenkiella parvula HOM05D003255 ORTHO05D003705 2.0e-14 82.0 61 57.4
AUR62032061 Chenopodium quinoa HOM05D003255 ORTHO05D003705 2.6e-14 81.6 54 63.0
CARHR287400 Cardamine hirsuta HOM05D003255 ORTHO05D003705 3.4e-14 81.3 61 55.7
Duzib128G1885 Durio zibethinus HOM05D003255 ORTHO05D003705 4.5e-14 80.9 71 57.7
AL2G19130 Arabidopsis lyrata HOM05D003255 ORTHO05D003705 5.9e-14 80.5 71 50.7
Carub.0002s0974 Capsella rubella HOM05D003255 ORTHO05D003705 5.9e-14 80.5 61 54.1
AUR62032686 Chenopodium quinoa HOM05D003255 ORTHO05D003705 5.9e-14 80.5 54 64.8
BcaC06g31750 Brassica carinata HOM05D003255 ORTHO05D003705 2.2e-13 78.6 61 55.7
ClCG10G013330 Citrullus lanatus HOM05D003255 ORTHO05D003705 3.8e-13 77.8 58 58.6
CDE01G0333 Ceratophyllum demersum HOM05D003255 ORTHO05D003705 5.0e-13 77.4 71 50.7
Aa31LG2G1910 Aethionema arabicum HOM05D003255 ORTHO05D003705 6.5e-13 77.0 71 52.1
AT1G64770 Arabidopsis thaliana HOM05D003255 ORTHO05D003705 2.5e-12 75.1 69 49.3
Carub.0002s0972 Capsella rubella HOM05D003255 ORTHO05D003705 7.2e-12 73.6 61 49.2
BolC4t24025H Brassica oleracea HOM05D003255 ORTHO05D003705 9.4e-12 73.2 54 57.4
BraA06t27695Z Brassica rapa HOM05D003255 ORTHO05D003705 9.4e-12 73.2 54 57.4
A06p48260 Brassica napus HOM05D003255 ORTHO05D003705 1.2e-11 72.8 54 57.4
TAR623G0824 Trochodendron aralioides HOM05D003255 ORTHO05D003705 3.6e-11 71.2 71 46.5
Zm00001eb004410 Zea mays HOM05D003255 ORTHO05D003705 7.9e-11 70.1 71 43.7
Os03g0158300 Oryza sativa ssp. japonica HOM05D003255 ORTHO05D003705 1.8e-10 68.9 71 45.1
CSS0029701 Camellia sinensis var. sinensis HOM05D003255 ORTHO05D003705 1.7e-08 62.4 56 55.4
Zm00001eb403240 Zea mays HOM05D003255 ORTHO05D003705 2.8e-08 61.6 64 45.3
ATR0697G035 Amborella trichopoda HOM05D003255 ORTHO05D003705 2.6e-06 55.1 60 41.7


User provided reference genes

Program Settings