Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 5.0e-41 170.6 83 100.0
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.1e-35 152.9 83 91.6
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 1.1e-27 126.3 83 74.7
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 2.4e-27 125.2 83 78.3
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 2.5e-24 115.2 83 71.1
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 3.6e-23 111.3 83 68.7
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 3.6e-23 111.3 83 66.3
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 2.4e-19 98.6 60 76.7
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.2e-18 96.3 85 58.8
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 2.0e-18 95.5 90 58.9
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 2.7e-18 95.1 95 57.9
Cpa.g.sc51.119 Carica papaya HOM05D004137 ORTHO05D004804 1.7e-17 92.4 85 61.2
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 5.5e-16 87.4 84 60.7
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 9.4e-16 86.7 76 57.9
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.1e-15 85.5 63 63.5
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.1e-15 85.5 63 63.5
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 2.1e-15 85.5 85 52.9
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 4.7e-15 84.3 73 58.9
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 6.1e-15 84.0 59 67.8
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 1.4e-14 82.8 83 57.8
CiPaw.09G002200 Carya illinoinensis HOM05D004137 ORTHO05D004804 3.0e-14 81.6 78 55.1
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 5.2e-14 80.9 95 52.6
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 6.8e-14 80.5 88 54.5
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 6.8e-14 80.5 92 47.8
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 8.8e-14 80.1 63 55.6
Prupe.7G004500 Prunus persica HOM05D004137 ORTHO05D004804 1.5e-13 79.3 53 67.9
ClCG10G013400 Citrullus lanatus HOM05D004137 ORTHO05D004804 2.6e-13 78.6 58 60.3
MELO3C026884.2 Cucumis melo HOM05D004137 ORTHO05D004804 5.7e-13 77.4 58 60.3
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 7.5e-13 77.0 63 54.0
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 9.8e-13 76.6 69 56.5
Lj1g0005734 Lotus japonicus HOM05D004137 ORTHO05D004804 2.2e-12 75.5 68 58.8
Medtr7g085660 Medicago truncatula HOM05D004137 ORTHO05D004804 3.7e-12 74.7 63 61.9
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 6.3e-12 73.9 69 53.6
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 8.3e-12 73.6 93 46.2
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 1.4e-11 72.8 75 52.0
Sed0004008 Sechium edule HOM05D004137 ORTHO05D004804 1.4e-11 72.8 58 56.9
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 3.1e-11 71.6 69 55.1
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 4.1e-11 71.2 81 49.4
FvH4_4g27600 Fragaria vesca HOM05D004137 ORTHO05D004804 7.0e-11 70.5 53 66.0
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 7.0e-11 70.5 58 53.4
VMungo1383G3601 Vigna mungo HOM05D001721 ORTHO05D001804 7.0e-11 70.5 56 60.7
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 9.1e-11 70.1 76 51.3
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 1.6e-10 69.3 64 50.0
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 2.0e-10 68.9 63 52.4
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 2.7e-10 68.6 77 48.1
Phvul.001G111100 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 3.5e-10 68.2 56 58.9
SHI14661 Sapria himalayana HOM05D004137 ORTHO05D004804 3.5e-10 68.2 64 53.1
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.5e-10 68.2 79 48.1
BcaC05g29894 Brassica carinata HOM05D004137 ORTHO05D004804 7.7e-10 67.0 65 50.8
A05p43490 Brassica napus HOM05D004137 ORTHO05D004804 7.7e-10 67.0 65 50.8
BolC5t34968H Brassica oleracea HOM05D004137 ORTHO05D004804 7.7e-10 67.0 65 50.8
BraA05t23089Z Brassica rapa HOM05D004137 ORTHO05D004804 7.7e-10 67.0 65 50.8
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 7.7e-10 67.0 61 54.1
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.7e-10 67.0 69 52.2
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.0e-09 66.6 61 54.1
BcaC05g30244 Brassica carinata HOM05D004137 ORTHO05D004804 1.3e-09 66.2 65 50.8
BcaC05g30291 Brassica carinata HOM05D004137 ORTHO05D004804 1.3e-09 66.2 65 50.8
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.3e-09 66.2 74 50.0
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 3.8e-09 64.7 69 44.9
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 3.8e-09 64.7 79 44.3
Carub.0003s0313 Capsella rubella HOM05D004137 ORTHO05D004804 5.0e-09 64.3 59 54.2
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 5.0e-09 64.3 63 44.4
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 5.0e-09 64.3 63 44.4
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 6.5e-09 63.9 58 53.4
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 6.5e-09 63.9 63 44.4
Glyma.19G112300 Glycine max HOM05D004137 ORTHO05D004804 6.5e-09 63.9 59 59.3
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 8.5e-09 63.5 65 46.2
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 1.1e-08 63.2 63 42.9
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.1e-08 63.2 61 47.5
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 1.9e-08 62.4 71 45.1
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 2.5e-08 62.0 58 55.2
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 3.2e-08 61.6 88 42.0
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 3.2e-08 61.6 63 47.6
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 4.2e-08 61.2 77 46.8
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 5.5e-08 60.8 63 41.3
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 5.5e-08 60.8 86 45.3
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 5.5e-08 60.8 81 44.4
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 9.4e-08 60.1 63 41.3
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 1.2e-07 59.7 80 41.2
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 1.6e-07 59.3 63 47.6
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 3.6e-07 58.2 64 46.9
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 6.1e-07 57.4 77 42.9
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 6.1e-07 57.4 63 41.3
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 1.0e-06 56.6 74 36.5
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 1.0e-06 56.6 78 39.7
Peaxi162Scf00003g04814 Petunia axillaris HOM05D004137 ORTHO05D004804 1.4e-06 56.2 70 48.6
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.8e-06 55.8 63 39.7
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 2.3e-06 55.5 82 40.2
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 3.0e-06 55.1 60 50.0
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 5.2e-06 54.3 77 40.3
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 5.2e-06 54.3 77 40.3
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 8.8e-06 53.5 58 43.1


User provided reference genes

Program Settings