Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.6e-115 419.5 215 100.0
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 1.1e-89 333.6 178 95.5
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 2.8e-72 275.8 181 78.5
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 1.1e-71 273.9 181 76.8
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 9.1e-71 270.8 181 75.1
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 1.6e-70 270.0 181 76.2
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 2.2e-69 266.2 181 73.5
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 2.9e-69 265.8 181 75.7
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 6.5e-69 264.6 181 74.6
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 8.5e-69 264.2 181 72.4
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 1.5e-68 263.5 181 74.6
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.5e-68 263.5 181 74.0
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 1.9e-68 263.1 181 75.1
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.9e-68 263.1 181 72.4
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.5e-68 262.7 181 73.5
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 9.4e-68 260.8 181 72.9
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 9.4e-68 260.8 181 71.8
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 1.2e-67 260.4 181 70.2
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 1.2e-67 260.4 183 71.0
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 2.1e-67 259.6 181 70.2
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 3.6e-67 258.8 181 73.5
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 8.0e-67 257.7 181 70.2
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 8.0e-67 257.7 181 71.3
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 1.0e-66 257.3 181 71.8
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.4e-66 256.9 181 71.3
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 1.4e-66 256.9 181 70.7
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.8e-66 256.5 181 72.9
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.3e-66 256.1 181 72.4
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 2.3e-66 256.1 181 72.9
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 4.0e-66 255.4 181 71.8
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 6.8e-66 254.6 181 70.7
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 6.8e-66 254.6 181 71.3
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 8.8e-66 254.2 181 72.4
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 1.5e-65 253.4 183 72.1
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.0e-65 253.1 181 71.8
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 2.0e-65 253.1 181 70.7
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 2.6e-65 252.7 183 69.4
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 2.6e-65 252.7 183 69.4
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 2.6e-65 252.7 181 69.1
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.4e-65 252.3 180 69.4
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 3.4e-65 252.3 183 70.5
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 3.4e-65 252.3 181 69.1
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 3.4e-65 252.3 181 69.1
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 4.4e-65 251.9 181 68.5
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 4.4e-65 251.9 181 70.2
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 7.5e-65 251.1 189 69.3
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 9.8e-65 250.8 181 69.1
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 1.3e-64 250.4 181 71.3
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 1.3e-64 250.4 181 71.3
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.7e-64 250.0 183 69.4
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.7e-64 250.0 183 69.4
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.7e-64 250.0 183 69.4
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 1.7e-64 250.0 188 68.1
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 2.2e-64 249.6 188 68.1
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 2.2e-64 249.6 181 69.1
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 2.2e-64 249.6 181 69.6
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 3.7e-64 248.8 181 69.1
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 4.9e-64 248.4 183 69.4
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 6.3e-64 248.1 181 69.1
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 8.3e-64 247.7 181 70.7
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 8.3e-64 247.7 193 67.4
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 8.3e-64 247.7 191 66.5
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 1.1e-63 247.3 181 69.6
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 1.4e-63 246.9 181 68.5
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 1.8e-63 246.5 188 67.0
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 1.8e-63 246.5 188 67.6
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 1.8e-63 246.5 181 70.2
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.4e-63 246.1 183 68.3
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 2.4e-63 246.1 181 69.1
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 2.4e-63 246.1 185 68.1
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 3.1e-63 245.7 183 67.8
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.1e-63 245.4 181 69.1
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 4.1e-63 245.4 181 68.0
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 5.4e-63 245.0 181 67.4
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.0e-63 244.6 182 70.9
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 9.2e-63 244.2 179 69.8
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 1.6e-62 243.4 179 69.8
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 2.7e-62 242.7 183 68.3
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 3.5e-62 242.3 176 69.9
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.5e-62 241.9 191 66.5
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 1.0e-61 240.7 178 69.1
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.3e-61 240.4 183 67.2
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 1.3e-61 240.4 182 68.7
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 5.0e-61 238.4 175 69.1
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 5.0e-61 238.4 181 66.3
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 6.6e-61 238.0 186 65.1
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 8.6e-61 237.7 174 69.5
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 8.6e-61 237.7 181 69.1
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 1.1e-60 237.3 179 68.2
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 1.5e-60 236.9 182 67.0
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 3.3e-60 235.7 183 66.7
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.3e-60 235.3 191 64.9
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 7.3e-60 234.6 181 65.7
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 2.1e-59 233.0 181 66.3
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 2.8e-59 232.6 181 65.2
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 3.6e-59 232.3 172 69.8
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 2.3e-58 229.6 181 64.1
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.0e-57 226.5 173 68.2
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 2.0e-57 226.5 181 64.6
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.4e-57 225.7 189 60.8
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 4.4e-57 225.3 181 66.3
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 7.5e-57 224.6 160 71.9
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 1.3e-56 223.8 181 64.6
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 4.9e-56 221.9 173 66.5
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 6.4e-56 221.5 182 63.2
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 6.4e-56 221.5 178 62.9
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.2e-54 217.2 194 60.3
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 1.2e-54 217.2 173 65.3
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 2.7e-54 216.1 188 62.8
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 7.8e-54 214.5 173 64.7
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.1e-52 210.7 198 58.6
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 2.5e-52 209.5 156 69.2
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 2.5e-52 209.5 218 55.5
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 1.6e-51 206.8 184 63.0
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 2.1e-51 206.5 311 43.1
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 2.8e-51 206.1 181 59.7
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 4.7e-51 205.3 181 59.1
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 6.2e-51 204.9 180 63.3
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 3.4e-49 199.1 231 51.9
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.5e-46 189.1 216 52.3
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 2.5e-44 183.0 178 55.6
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.5e-44 183.0 113 76.1
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 1.8e-42 176.8 200 52.0
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 2.3e-42 176.4 181 52.5
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 2.6e-41 172.9 128 71.9
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 8.3e-40 167.9 150 60.7
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 7.1e-39 164.9 112 73.2
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 6.0e-38 161.8 166 53.0
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 4.3e-36 155.6 112 67.9
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 5.6e-36 155.2 207 48.3
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 3.6e-35 152.5 184 44.0
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 6.8e-34 148.3 81 84.0
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 4.4e-33 145.6 148 54.7
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 8.4e-32 141.4 112 63.4
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.1e-31 141.0 144 52.1
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.5e-28 129.8 81 75.3
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 5.6e-28 128.6 81 74.1
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.6e-28 128.6 81 74.1
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.1e-27 126.7 99 69.7
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 1.5e-25 120.6 98 64.3
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 2.0e-25 120.2 93 65.6
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 2.0e-25 120.2 176 40.9
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 9.3e-23 111.3 173 39.9
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 1.2e-17 94.4 68 73.5
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 7.6e-17 91.7 77 61.0
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.2e-16 90.1 68 67.6
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.9e-15 87.0 130 41.5
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 6.7e-13 78.6 74 59.5
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 6.7e-13 78.6 45 80.0
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 1.1e-12 77.8 156 33.3
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.5e-12 77.4 103 42.7
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 1.9e-12 77.0 70 61.4
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.3e-12 76.3 101 49.5
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 2.8e-11 73.2 49 67.3
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 3.6e-11 72.8 75 58.7
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 8.1e-11 71.6 56 69.6
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.4e-10 70.9 53 66.0
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 3.1e-10 69.7 166 33.1
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.5e-09 67.4 78 48.7
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 3.4e-09 66.2 45 66.7


User provided reference genes

Program Settings