Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 3.1e-89 333.6 248 100.0
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 3.8e-79 300.1 248 92.7
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.4e-65 255.0 248 82.7
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 2.7e-40 171.0 176 52.3
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 1.1e-36 159.1 174 64.9
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 1.2e-35 155.6 173 49.1
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 7.6e-35 152.9 173 63.0
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 9.9e-35 152.5 174 50.0
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 2.2e-34 151.4 173 50.9
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 2.9e-34 151.0 173 63.0
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 4.9e-34 150.2 176 48.9
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 4.9e-34 150.2 176 48.9
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 8.4e-34 149.4 174 51.7
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 1.9e-33 148.3 174 59.2
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 4.6e-32 143.7 175 46.9
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 4.6e-32 143.7 175 46.9
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.7e-31 141.7 175 45.7
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.7e-31 139.4 175 57.7
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.7e-31 139.4 175 57.7
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 2.5e-30 137.9 139 57.6
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 3.3e-30 137.5 175 57.1
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.3e-30 137.5 175 56.6
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 3.3e-30 137.5 172 47.1
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 3.3e-30 137.5 178 56.7
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.3e-30 136.3 175 46.3
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 7.3e-30 136.3 170 42.9
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 3.6e-29 134.0 161 50.3
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 3.6e-29 134.0 177 42.9
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 6.2e-29 133.3 176 58.0
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 4.0e-28 130.6 158 51.9
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 5.2e-28 130.2 178 43.8
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 5.8e-27 126.7 184 42.9
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 1.3e-26 125.6 176 56.2
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 1.7e-26 125.2 178 44.9
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 2.9e-26 124.4 174 39.7
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 3.8e-26 124.0 178 43.3
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 3.8e-26 124.0 126 68.3
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 1.1e-25 122.5 116 56.9
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 1.1e-25 122.5 172 57.0
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 2.4e-25 121.3 142 47.2
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 5.4e-25 120.2 148 42.6
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 7.1e-25 119.8 178 41.0
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 9.3e-25 119.4 176 40.9
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 9.3e-25 119.4 148 44.6
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 9.3e-25 119.4 70 78.6
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 1.6e-24 118.6 174 43.1
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 2.7e-24 117.9 186 50.5
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 2.3e-23 114.8 173 39.9
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 3.0e-23 114.4 173 39.9
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 3.0e-23 114.4 98 55.1
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 1.1e-22 112.5 123 44.7
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 1.1e-22 112.5 171 40.9
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.5e-22 112.1 140 42.9
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 2.5e-22 111.3 181 38.1
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 2.5e-22 111.3 171 39.2
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 2.5e-22 111.3 232 59.9
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 3.3e-22 110.9 140 42.1
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 3.3e-22 110.9 161 41.6
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 3.3e-22 110.9 142 45.1
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 4.3e-22 110.5 158 55.7
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 5.6e-22 110.2 172 38.4
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 7.3e-22 109.8 138 42.8
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 9.6e-22 109.4 188 50.0
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 1.3e-21 109.0 222 34.7
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 1.6e-21 108.6 161 54.0
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 1.6e-21 108.6 174 39.1
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 2.1e-21 108.2 177 50.8
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 2.8e-21 107.8 185 49.7
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 2.8e-21 107.8 178 39.9
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 4.8e-21 107.1 159 40.9
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 6.2e-21 106.7 174 37.9
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 6.2e-21 106.7 174 38.5
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 6.2e-21 106.7 197 48.2
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 1.4e-20 105.5 192 50.0
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 3.1e-20 104.4 174 37.9
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 3.1e-20 104.4 174 37.9
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 4.0e-20 104.0 134 44.0
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 4.5e-19 100.5 71 66.2
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 5.8e-19 100.1 96 50.0
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 1.7e-18 98.6 151 52.3
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 2.2e-18 98.2 197 47.2
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 8.4e-18 96.3 177 36.7
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 1.9e-17 95.1 98 52.0
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 3.2e-17 94.4 116 41.4
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 9.3e-17 92.8 69 63.8
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.2e-16 92.4 174 36.2
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 7.9e-16 89.7 176 33.0
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 7.9e-16 89.7 173 34.1
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 1.9e-14 85.1 89 43.8
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 3.1e-12 77.8 76 82.9
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 4.9e-10 70.5 52 69.2
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 8.4e-10 69.7 76 44.7
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 5.5e-09 67.0 76 44.7
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 1.9e-06 58.5 68 50.0


User provided reference genes

Program Settings