Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.8e-131 471.9 227 100.0
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 3.0e-120 435.3 226 92.5
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 2.1e-110 402.5 224 84.8
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 2.1e-110 402.5 224 84.8
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 4.7e-110 401.4 225 86.7
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 5.2e-109 397.9 233 82.8
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 2.0e-108 396.0 220 83.2
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 1.3e-107 393.3 219 84.5
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 2.9e-107 392.1 220 81.8
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 3.7e-107 391.7 218 83.5
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.4e-106 389.8 218 84.4
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 3.2e-106 388.7 218 82.6
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 1.2e-105 386.7 220 82.7
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 1.0e-104 383.6 222 82.4
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 3.9e-104 381.7 220 81.8
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 6.6e-104 380.9 220 81.4
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 1.9e-103 379.4 225 80.0
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 4.3e-103 378.3 225 80.4
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 5.6e-103 377.9 220 80.5
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.2e-102 376.7 225 79.6
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 3.6e-102 375.2 219 79.9
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 6.2e-102 374.4 225 79.1
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 6.2e-102 374.4 221 80.5
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 6.2e-102 374.4 220 79.5
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 8.1e-102 374.0 220 79.1
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.1e-101 373.6 218 78.4
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.4e-101 373.2 220 79.5
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 5.2e-101 371.3 220 80.9
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.5e-100 369.8 218 78.4
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 2.0e-100 369.4 219 76.7
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 5.8e-100 367.9 225 78.2
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 5.8e-100 367.9 222 75.7
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 7.6e-100 367.5 218 76.6
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 2.2e-99 365.9 216 81.0
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 6.4e-99 364.4 216 79.2
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 6.4e-99 364.4 216 78.7
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 8.4e-99 364.0 226 75.2
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 1.4e-98 363.2 215 80.0
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.4e-98 363.2 222 77.0
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 3.2e-98 362.1 219 78.1
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 3.2e-98 362.1 219 77.6
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 3.2e-98 362.1 226 77.0
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 7.1e-98 360.9 220 76.8
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.2e-97 360.1 220 75.0
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 1.6e-97 359.8 214 77.1
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 2.7e-97 359.0 226 75.2
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 4.6e-97 358.2 204 80.4
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 6.0e-97 357.8 218 77.1
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 1.7e-96 356.3 220 77.7
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 2.3e-96 355.9 226 74.3
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 3.9e-96 355.1 222 77.9
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 3.9e-96 355.1 216 76.9
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 3.9e-96 355.1 221 75.6
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 8.7e-96 354.0 220 77.3
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 1.1e-95 353.6 228 77.2
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 1.5e-95 353.2 222 73.0
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 1.5e-95 353.2 217 75.6
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.9e-95 352.8 218 76.1
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 2.5e-95 352.4 221 74.2
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 3.3e-95 352.1 220 75.5
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 9.6e-95 350.5 221 75.1
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 9.6e-95 350.5 218 75.7
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 1.3e-94 350.1 223 75.3
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 2.1e-94 349.4 216 75.0
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 2.1e-94 349.4 228 72.8
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 2.8e-94 349.0 220 75.0
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 3.6e-94 348.6 221 74.2
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 3.6e-94 348.6 216 76.9
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 1.1e-93 347.1 226 72.6
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 1.4e-93 346.7 226 75.7
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 2.4e-93 345.9 216 75.0
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 3.1e-93 345.5 214 73.8
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 4.0e-93 345.1 220 73.6
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 5.3e-93 344.7 225 71.6
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 5.3e-93 344.7 226 71.2
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 5.3e-93 344.7 207 75.4
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 6.9e-93 344.4 214 73.8
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 9.0e-93 344.0 226 70.8
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 9.0e-93 344.0 237 71.7
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 2.0e-92 342.8 214 74.3
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 2.6e-92 342.4 214 73.8
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.6e-92 342.4 292 60.6
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 5.8e-92 341.3 216 74.1
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 5.8e-92 341.3 216 74.1
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 7.6e-92 340.9 214 75.2
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 7.6e-92 340.9 214 74.3
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.3e-91 340.1 227 72.2
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 1.7e-91 339.7 247 68.0
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 2.9e-91 339.0 213 74.2
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 3.8e-91 338.6 249 64.7
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.9e-90 336.3 222 72.1
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 3.2e-90 335.5 214 73.4
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 4.2e-90 335.1 224 71.4
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 5.4e-90 334.7 215 73.5
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 7.1e-90 334.3 214 72.9
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 7.1e-90 334.3 214 72.9
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 7.1e-90 334.3 215 72.6
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 9.3e-90 334.0 217 72.4
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 1.6e-89 333.2 217 71.0
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 6.0e-89 331.3 198 75.3
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 3.9e-88 328.6 224 69.2
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 3.9e-88 328.6 219 70.8
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 8.7e-88 327.4 221 70.6
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 5.6e-87 324.7 213 71.4
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 5.3e-85 318.2 212 71.2
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 8.4e-83 310.8 213 67.1
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 3.2e-82 308.9 231 67.5
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.3e-80 303.5 223 69.1
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 2.1e-78 296.2 363 46.0
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 4.8e-78 295.0 203 70.4
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.7e-75 286.6 180 73.9
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 8.4e-75 284.3 189 72.5
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 8.7e-72 274.2 180 72.8
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 8.2e-70 267.7 246 58.1
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.1e-69 267.3 219 61.6
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.4e-69 266.2 220 62.3
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 3.4e-68 262.3 209 58.9
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.5e-66 256.1 177 68.9
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 7.1e-66 254.6 214 62.1
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.9e-63 246.5 218 58.3
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 1.8e-61 240.0 133 78.9
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 2.2e-59 233.0 162 64.8
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 5.0e-59 231.9 167 64.1
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 4.2e-58 228.8 222 54.1
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.2e-57 227.3 124 80.6
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 1.5e-55 220.3 134 74.6
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 9.7e-55 217.6 162 65.4
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 5.3e-53 211.8 133 72.9
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 1.7e-51 206.8 132 73.5
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 3.9e-48 195.7 133 70.7
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 8.0e-41 171.4 148 56.8
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 1.0e-40 171.0 124 56.5
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 7.7e-36 154.8 197 41.1
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.5e-31 140.6 99 65.7
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 9.8e-31 137.9 92 69.6
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.9e-27 126.3 133 52.6
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 8.6e-19 98.2 75 70.7
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 9.8e-15 84.7 65 69.2
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 8.0e-09 65.1 63 58.7
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.0e-08 62.8 32 81.2
ATR0598G211 Amborella trichopoda HOM05D005134 ORTHO05D067863 6.8e-08 62.0 72 44.4
Sabra19G0029700 Salix brachista HOM05D010192 ORTHO05D012386 1.7e-06 57.4 35 74.3


User provided reference genes

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