Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G043800 Populus trichocarpa HOM05D011447 ORTHO05D010069 2.8e-67 258.5 129 100.0
Potri.016G093900 Populus trichocarpa HOM05D011447 ORTHO05D010069 1.4e-61 239.6 125 95.2
Sabra13G0040600 Salix brachista HOM05D011447 ORTHO05D010069 2.5e-55 218.8 131 84.0
Potri.019G013300 Populus trichocarpa HOM05D011447 ORTHO05D010069 6.1e-38 161.0 131 66.4
Potri.019G013750 Populus trichocarpa HOM05D011447 ORTHO05D010069 1.4e-37 159.8 132 67.4
Sabra19G0016900 Salix brachista HOM05D011447 ORTHO05D010069 6.8e-29 131.0 115 63.5
Sabra19G0026300 Salix brachista HOM05D011447 ORTHO05D010069 6.8e-29 131.0 115 63.5
Sabra19G0016700 Salix brachista HOM05D011447 ORTHO05D010069 9.5e-23 110.5 94 66.0
Manes.08G137100 Manihot esculenta HOM05D011447 ORTHO05D010069 3.6e-22 108.6 133 46.6
Sabra19G0026400 Salix brachista HOM05D011447 ORTHO05D010069 1.4e-21 106.7 94 64.9
Sabra19G0016800 Salix brachista HOM05D001365 ORTHO05D010069 8.9e-21 104.0 92 62.0
Manes.09G150100 Manihot esculenta HOM05D011447 ORTHO05D010069 1.1e-18 97.1 138 47.1
Manes.08G137000 Manihot esculenta HOM05D011447 ORTHO05D010069 1.4e-18 96.7 126 50.8
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 4.3e-15 85.1 114 43.9
COL.COLO4_15410 Corchorus olitorius HOM05D009218 ORTHO05D010069 4.7e-14 81.6 122 42.6
Rhsim05G0175900 Rhododendron simsii HOM05D009218 ORTHO05D010069 8.9e-13 77.4 123 43.1
Cpa.g.sc162.8 Carica papaya HOM05D009218 ORTHO05D010069 2.0e-12 76.3 115 43.5
Eucgr.H04261 Eucalyptus grandis HOM05D009218 ORTHO05D010069 3.4e-12 75.5 116 44.8
QL03p029061 Quercus lobata HOM05D009218 ORTHO05D010069 4.4e-12 75.1 121 39.7
QL03p028359 Quercus lobata HOM05D009218 ORTHO05D010069 5.8e-12 74.7 121 39.7
Gorai.013G186400 Gossypium raimondii HOM05D009218 ORTHO05D010069 3.7e-11 72.0 110 41.8
QL03p028391 Quercus lobata HOM05D011447 ORTHO05D010069 1.4e-10 70.1 102 44.1
QL03p029028 Quercus lobata HOM05D011447 ORTHO05D010069 1.4e-10 70.1 102 44.1
PGR004G0279 Punica granatum HOM05D011447 ORTHO05D010069 1.9e-10 69.7 100 47.0
Gohir.A13G168950 Gossypium hirsutum HOM05D009218 ORTHO05D010069 2.4e-10 69.3 112 40.2
Ciclev10022688m.g Citrus clementina HOM05D009218 ORTHO05D010069 3.2e-10 68.9 114 40.4
Thecc.05G277300 Theobroma cacao HOM05D009218 ORTHO05D010069 4.1e-10 68.6 62 61.3
Prupe.6G347000 Prunus persica HOM05D009218 ORTHO05D010069 3.5e-09 65.5 119 41.2
Sed0017066 Sechium edule HOM05D009218 ORTHO05D010069 6.0e-09 64.7 109 41.3
Atru.chr2.882 Acer truncatum HOM05D009218 ORTHO05D010069 3.0e-08 62.4 49 63.3
SHI31328 Sapria himalayana HOM05D011447 ORTHO05D010069 3.0e-08 62.4 102 45.1
Sed0020224 Sechium edule HOM05D009218 ORTHO05D010069 3.0e-08 62.4 117 35.0
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.0e-08 62.4 112 38.4
ClCG02G016900 Citrullus lanatus HOM05D009218 ORTHO05D010069 6.6e-08 61.2 117 41.0
Sc20g0000500 Simmondsia chinensis HOM05D009218 ORTHO05D010069 6.6e-08 61.2 41 70.7
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.5e-07 60.1 56 53.6
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.5e-07 60.1 100 39.0
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.5e-07 60.1 128 34.4
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.9e-07 59.7 71 47.9
Glyma.19G246700 Glycine max HOM05D020401 ORTHO05D010069 5.6e-07 58.2 98 36.7
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 5.6e-07 58.2 100 40.0
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 5.6e-07 58.2 111 39.6
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 7.3e-07 57.8 103 39.8
ClCG02G016910 Citrullus lanatus HOM05D009218 ORTHO05D010069 7.3e-07 57.8 44 61.4
CsaV3_2G003860 Cucumis sativus L. HOM05D009218 ORTHO05D010069 7.3e-07 57.8 40 67.5
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 7.3e-07 57.8 50 62.0
RcHm_v2.0_Chr3g0450331 Rosa chinensis HOM05D009218 ORTHO05D010069 9.5e-07 57.4 120 39.2
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.2e-06 57.0 88 40.9
Glyma.03G249100 Glycine max HOM05D020401 ORTHO05D010069 1.2e-06 57.0 115 33.9
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.6e-06 56.6 50 58.0
Nn3g19575 Nelumbo nucifera HOM05D011447 ORTHO05D010069 1.6e-06 56.6 99 41.4
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.6e-06 56.6 49 59.2
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 2.1e-06 56.2 50 60.0
CAN.G1465.2 Capsicum annuum HOM05D011340 ORTHO05D010069 2.8e-06 55.8 36 75.0
MELO3C004409.2 Cucumis melo HOM05D009218 ORTHO05D010069 2.8e-06 55.8 40 65.0
FAN02G3090 Fragaria x ananassa HOM05D009218 ORTHO05D010069 2.8e-06 55.8 122 37.7
FAN05G0115 Fragaria x ananassa HOM05D009218 ORTHO05D010069 2.8e-06 55.8 122 36.9
FAN05G4900 Fragaria x ananassa HOM05D009218 ORTHO05D010069 2.8e-06 55.8 122 36.9
FAN09G2898 Fragaria x ananassa HOM05D009218 ORTHO05D010069 2.8e-06 55.8 122 37.7
VMungo0540G0127 Vigna mungo HOM05D020401 ORTHO05D010069 2.8e-06 55.8 116 32.8
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 3.6e-06 55.5 51 56.9
CiPaw.07G070100 Carya illinoinensis HOM05D009218 ORTHO05D010069 3.6e-06 55.5 69 50.7
Gohir.D13G174325 Gossypium hirsutum HOM05D009218 ORTHO05D010069 3.6e-06 55.5 58 56.9
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 3.6e-06 55.5 50 60.0
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 3.6e-06 55.5 56 55.4
CiPaw.07G070200 Carya illinoinensis HOM05D009218 ORTHO05D010069 4.7e-06 55.1 61 49.2
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 4.7e-06 55.1 50 58.0
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 6.2e-06 54.7 114 37.7
Sed0021944 Sechium edule HOM05D009218 ORTHO05D010069 6.2e-06 54.7 43 62.8
FvH4_6g02470 Fragaria vesca HOM05D009218 ORTHO05D010069 8.1e-06 54.3 122 36.9
FAN14G1769 Fragaria x ananassa HOM05D009218 ORTHO05D010069 8.1e-06 54.3 122 36.9
FAN14G5335 Fragaria x ananassa HOM05D009218 ORTHO05D010069 8.1e-06 54.3 122 36.9
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 8.1e-06 54.3 50 56.0
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 8.1e-06 54.3 49 57.1
Phvul.006G103800 Phaseolus vulgaris HOM05D020401 ORTHO05D010069 8.1e-06 54.3 38 68.4
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 8.1e-06 54.3 66 48.5
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 8.1e-06 54.3 63 54.0


User provided reference genes

Program Settings