Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 1.7e-67 259.6 172 100.0
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 3.3e-39 165.6 148 66.2
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 1.0e-35 154.1 96 87.5
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 5.1e-32 141.7 149 64.4
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 7.4e-31 137.9 147 56.5
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 3.1e-29 132.5 155 69.0
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 3.2e-26 122.5 148 50.0
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 4.2e-26 122.1 137 55.5
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 5.5e-26 121.7 157 53.5
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 9.3e-26 120.9 157 52.9
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 3.6e-25 119.0 181 48.6
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 1.0e-24 117.5 155 51.6
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 1.0e-24 117.5 152 48.7
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.0e-24 117.5 152 48.7
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.0e-24 117.5 152 48.7
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 1.0e-24 117.5 152 48.7
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 1.8e-24 116.7 106 69.8
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 1.8e-24 116.7 106 69.8
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 2.3e-24 116.3 152 64.5
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 3.9e-24 115.5 155 49.0
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 3.9e-24 115.5 153 48.4
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 3.9e-24 115.5 154 48.7
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 1.9e-23 113.2 104 67.3
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 7.4e-23 111.3 150 49.3
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 1.3e-22 110.5 160 49.4
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 2.2e-22 109.8 150 48.0
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 6.3e-22 108.2 102 63.7
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 4.1e-21 105.5 181 43.6
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 6.9e-21 104.8 144 50.0
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 3.4e-20 102.4 146 45.9
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 7.7e-20 101.3 141 49.6
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 1.7e-19 100.1 102 61.8
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 1.7e-19 100.1 102 59.8
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 1.7e-19 100.1 147 44.2
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 5.0e-19 98.6 144 47.2
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 5.0e-19 98.6 150 47.3
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 5.0e-19 98.6 137 46.7
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 8.5e-19 97.8 103 59.2
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 1.4e-18 97.1 158 46.8
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 9.4e-18 94.4 154 47.4
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 1.2e-17 94.0 144 45.1
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 3.6e-17 92.4 94 58.5
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 4.7e-17 92.0 156 43.6
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 6.1e-17 91.7 94 58.5
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 1.0e-16 90.9 90 57.8
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 1.0e-16 90.9 145 44.8
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 1.0e-16 90.9 145 42.8
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 1.8e-16 90.1 94 59.6
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 2.3e-16 89.7 158 43.0
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 2.3e-16 89.7 151 39.7
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 3.0e-16 89.4 94 58.5
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 5.1e-16 88.6 99 57.6
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 6.7e-16 88.2 148 42.6
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 6.7e-16 88.2 156 41.0
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 6.7e-16 88.2 98 56.1
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 8.8e-16 87.8 95 58.9
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 8.8e-16 87.8 145 42.8
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 1.5e-15 87.0 94 57.4
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 1.5e-15 87.0 148 42.6
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 1.5e-15 87.0 103 56.3
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 2.0e-15 86.7 157 42.0
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 2.0e-15 86.7 152 41.4
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 2.0e-15 86.7 139 46.0
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 2.0e-15 86.7 150 42.0
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 3.3e-15 85.9 95 57.9
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 3.3e-15 85.9 94 57.4
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 3.3e-15 85.9 94 57.4
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 3.3e-15 85.9 94 57.4
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 4.4e-15 85.5 95 53.7
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 5.7e-15 85.1 95 57.9
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 5.7e-15 85.1 152 42.1
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 5.7e-15 85.1 145 43.4
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 7.4e-15 84.7 148 39.9
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 9.7e-15 84.3 98 56.1
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 9.7e-15 84.3 147 41.5
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 2.2e-14 83.2 94 56.4
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 4.8e-14 82.0 150 44.0
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 4.8e-14 82.0 152 42.1
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 4.8e-14 82.0 161 41.6
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 6.3e-14 81.6 101 50.5
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 6.3e-14 81.6 129 41.9
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 6.3e-14 81.6 142 42.3
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 6.3e-14 81.6 98 52.0
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 8.2e-14 81.3 99 53.5
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 1.1e-13 80.9 151 45.0
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 1.1e-13 80.9 88 56.8
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 1.4e-13 80.5 91 54.9
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 1.4e-13 80.5 106 51.9
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 1.4e-13 80.5 91 51.6
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 1.8e-13 80.1 93 50.5
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 1.8e-13 80.1 76 59.2
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 2.4e-13 79.7 96 51.0
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 2.4e-13 79.7 94 55.3
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 2.4e-13 79.7 94 55.3
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 2.4e-13 79.7 94 55.3
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 2.4e-13 79.7 135 42.2
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 2.4e-13 79.7 146 42.5
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 3.1e-13 79.3 90 53.3
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 4.1e-13 79.0 142 40.1
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 4.1e-13 79.0 103 53.4
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 4.1e-13 79.0 140 44.3
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 5.3e-13 78.6 93 53.8
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 6.9e-13 78.2 104 57.7
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 6.9e-13 78.2 152 38.8
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 6.9e-13 78.2 76 64.5
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 9.1e-13 77.8 150 39.3
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 1.2e-12 77.4 131 42.7
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.2e-12 77.4 93 51.6
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 2.0e-12 76.6 76 59.2
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 2.6e-12 76.3 79 55.7
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 2.6e-12 76.3 79 55.7
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 2.6e-12 76.3 79 55.7
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 2.6e-12 76.3 79 60.8
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 3.4e-12 75.9 92 52.2
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 4.5e-12 75.5 96 49.0
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 4.5e-12 75.5 100 48.0
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 7.7e-12 74.7 151 37.1
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 7.7e-12 74.7 99 50.5
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 7.7e-12 74.7 156 38.5
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 1.3e-11 73.9 91 50.5
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 2.2e-11 73.2 42 85.7
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 2.9e-11 72.8 93 52.7
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 3.8e-11 72.4 135 39.3
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 3.8e-11 72.4 92 46.7
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 5.0e-11 72.0 67 59.7
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 5.0e-11 72.0 51 68.6
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 5.0e-11 72.0 95 47.4
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 5.0e-11 72.0 100 51.0
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 6.5e-11 71.6 84 51.2
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 8.5e-11 71.2 81 53.1
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 8.5e-11 71.2 79 49.4
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 8.5e-11 71.2 89 50.6
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 1.4e-10 70.5 148 41.2
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 1.9e-10 70.1 84 52.4
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 5.5e-10 68.6 145 39.3
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 7.2e-10 68.2 91 48.4
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 7.2e-10 68.2 100 48.0
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 7.2e-10 68.2 50 66.0
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 9.4e-10 67.8 142 37.3
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 9.4e-10 67.8 145 39.3
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 1.2e-09 67.4 96 47.9
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 1.2e-09 67.4 43 74.4
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 1.6e-09 67.0 89 48.3
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 2.7e-09 66.2 146 34.9
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 3.6e-09 65.9 92 46.7
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 3.6e-09 65.9 44 70.5
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 1.0e-08 64.3 42 73.8
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 1.4e-08 63.9 33 93.9
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 1.8e-08 63.5 102 47.1
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 2.3e-08 63.2 37 81.1
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 3.0e-08 62.8 56 58.9
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 8.8e-08 61.2 32 90.6
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 1.5e-07 60.5 94 40.4
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 3.3e-07 59.3 37 70.3
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 1.3e-06 57.4 39 71.8
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 1.3e-06 57.4 53 54.7
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 1.7e-06 57.0 43 53.5
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 1.7e-06 57.0 32 84.4


User provided reference genes

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