Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 9.4e-292 1006.1 510 100.0
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 1.4e-239 832.8 488 89.5
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 2.4e-223 778.9 501 81.0
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 4.5e-217 758.1 504 77.4
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 4.3e-159 565.5 518 60.6
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 1.7e-147 526.9 508 60.0
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 3.9e-144 515.8 507 59.0
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 5.8e-140 501.9 505 57.0
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 2.9e-139 499.6 509 59.1
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 3.0e-136 489.6 503 55.3
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 5.6e-135 485.3 509 56.8
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 5.2e-133 478.8 502 56.2
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 6.8e-133 478.4 508 57.5
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 2.9e-131 473.0 431 60.1
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 4.9e-131 472.2 513 55.6
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 3.2e-122 443.0 510 52.7
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 1.2e-121 441.0 500 51.6
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 3.9e-120 436.0 488 53.3
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.5e-119 433.3 510 51.8
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.3e-118 431.0 505 53.1
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 1.3e-118 431.0 518 52.5
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 4.8e-118 429.1 505 52.9
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 7.6e-116 421.8 518 51.9
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 2.2e-115 420.2 518 51.7
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.7e-113 413.3 507 51.3
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 4.6e-113 412.5 514 50.4
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 2.3e-112 410.2 511 50.3
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 1.3e-107 394.4 497 49.3
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 2.2e-107 393.7 499 49.1
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 1.1e-106 391.3 512 49.4
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 7.1e-106 388.7 525 48.6
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 9.3e-106 388.3 518 46.5
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 1.5e-103 380.9 457 49.9
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 5.6e-103 379.0 518 45.4
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 8.2e-102 375.2 454 48.5
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 5.8e-100 369.0 528 45.1
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 8.4e-99 365.2 454 48.0
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 1.9e-98 364.0 505 46.5
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 5.5e-98 362.5 510 45.5
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 7.1e-98 362.1 502 46.0
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 2.7e-97 360.1 529 47.1
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 3.3e-95 353.2 560 42.3
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 5.7e-95 352.4 559 42.4
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 7.4e-95 352.1 522 46.0
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 1.1e-93 348.2 445 46.7
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 1.8e-93 347.4 417 48.4
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 9.0e-93 345.1 447 47.0
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 2.2e-91 340.5 518 45.8
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 2.9e-91 340.1 486 43.8
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 1.4e-90 337.8 443 45.8
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 2.7e-89 333.6 493 44.2
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 1.8e-88 330.9 435 45.3
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 1.8e-88 330.9 435 45.3
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 3.0e-88 330.1 500 43.0
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 6.7e-88 328.9 514 42.0
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 7.4e-87 325.5 526 41.6
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 6.3e-86 322.4 497 43.1
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 1.8e-85 320.9 522 42.0
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 5.3e-85 319.3 518 42.1
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 3.4e-84 316.6 509 41.8
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 1.7e-83 314.3 431 46.9
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 3.8e-83 313.2 456 45.0
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 5.0e-83 312.8 541 41.0
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 6.5e-83 312.4 509 44.6
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 4.2e-82 309.7 458 45.2
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 3.6e-81 306.6 519 41.8
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 4.7e-81 306.2 500 42.4
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 6.1e-81 305.8 509 41.3
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 2.3e-80 303.9 452 45.4
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 3.9e-80 303.1 500 42.4
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 4.8e-78 296.2 501 42.3
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 4.8e-78 296.2 447 43.6
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.1e-77 295.0 449 45.0
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 5.3e-77 292.7 498 41.8
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 7.0e-77 292.4 429 44.8
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 1.3e-75 288.1 567 37.2
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 2.1e-73 280.8 501 39.3
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 3.6e-73 280.0 443 40.9
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 6.1e-73 279.3 542 37.8
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 2.3e-72 277.3 511 39.9
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 8.8e-72 275.4 567 36.5
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 4.4e-71 273.1 506 37.7
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 5.7e-71 272.7 450 40.4
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 1.3e-70 271.6 514 39.1
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 4.8e-70 269.6 460 40.4
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 1.1e-69 268.5 445 40.0
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 2.4e-69 267.3 464 40.3
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 2.4e-69 267.3 484 39.0
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 5.3e-69 266.2 478 37.4
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 1.1e-66 258.5 508 37.6
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 2.5e-66 257.3 452 40.0
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.5e-66 256.1 482 40.5
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 3.6e-65 253.4 364 42.6
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.0e-64 251.9 533 34.9
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.0e-64 251.9 466 37.3
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 2.3e-64 250.8 449 38.5
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 8.8e-64 248.8 510 36.5
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 1.4e-61 241.5 478 37.2
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 7.0e-61 239.2 452 38.1
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 7.0e-61 239.2 452 38.1
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 7.0e-61 239.2 452 38.1
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 5.0e-59 233.0 495 36.4
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 3.8e-51 206.8 479 34.9
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 4.9e-46 189.9 243 48.6
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 5.4e-45 186.4 292 40.8
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 1.2e-44 185.3 444 33.1
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 9.8e-39 165.6 233 43.8
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 1.6e-36 158.3 477 28.9
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 1.7e-30 138.3 518 27.8
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 4.1e-21 107.1 233 36.5
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 9.2e-21 105.9 168 41.7
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 3.5e-20 104.0 226 37.2
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 3.5e-20 104.0 217 36.4
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.1e-13 82.4 165 37.6
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.1e-12 78.2 93 47.3
C03p36010 Brassica napus HOM05D006741 ORTHO05D008434 1.6e-09 68.6 58 65.5
BolC3t15911H Brassica oleracea HOM05D006741 ORTHO05D008434 1.6e-09 68.6 58 65.5
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 1.3e-06 58.9 174 31.0


User provided reference genes

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