Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 0.0e+00 1523.1 758 100.0
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 0.0e+00 1356.7 762 89.5
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 0.0e+00 1095.1 756 72.1
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.4e-294 1016.1 763 65.9
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 3.3e-293 1011.5 765 66.9
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 3.8e-289 998.0 760 66.4
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 6.5e-289 997.3 765 66.0
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.1e-288 996.5 768 64.8
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 9.4e-288 993.4 762 65.4
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 2.6e-285 985.3 765 63.8
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 3.3e-285 984.9 746 65.7
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 1.7e-284 982.6 765 64.4
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 2.2e-284 982.2 756 64.6
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 2.2e-284 982.2 767 63.9
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 4.8e-284 981.1 765 64.6
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.1e-283 979.9 766 63.8
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.4e-283 979.5 765 64.4
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 7.0e-283 977.2 765 64.2
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.2e-282 976.5 761 65.0
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 1.3e-281 973.0 765 65.0
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 3.8e-281 971.5 761 62.8
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 5.0e-281 971.1 767 63.8
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 9.4e-280 966.8 765 62.9
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.2e-278 961.1 765 62.6
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 9.7e-277 956.8 758 62.5
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 3.7e-276 954.9 761 62.0
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 6.3e-276 954.1 761 62.7
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 1.1e-275 953.4 761 62.7
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 1.6e-274 949.5 763 62.0
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.0e-274 949.1 762 62.1
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 7.7e-274 947.2 761 61.8
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 7.7e-274 947.2 762 62.7
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 1.0e-273 946.8 759 61.0
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 2.2e-273 945.7 761 61.0
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 1.5e-272 943.0 759 61.5
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 1.9e-272 942.6 760 62.4
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 5.5e-272 941.0 765 61.0
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 1.2e-271 939.9 763 60.6
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 2.3e-270 935.6 763 61.6
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 2.6e-269 932.2 764 61.1
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 4.4e-269 931.4 761 61.2
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 5.7e-269 931.0 761 61.4
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 7.5e-269 930.6 756 61.6
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 2.2e-268 929.1 765 60.8
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 3.7e-268 928.3 765 61.0
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 4.8e-268 927.9 761 61.2
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 8.3e-268 927.2 761 60.1
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 4.1e-267 924.9 765 60.4
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 5.4e-267 924.5 756 61.4
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 7.0e-267 924.1 762 62.5
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 7.0e-267 924.1 762 59.8
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 1.6e-266 922.9 763 60.6
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 2.9e-265 918.7 763 59.9
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 6.6e-265 917.5 761 60.2
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 6.6e-265 917.5 760 61.1
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 3.3e-264 915.2 765 60.7
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 6.1e-263 911.0 765 59.7
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 1.4e-262 909.8 766 59.7
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 1.4e-262 909.8 764 59.3
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 6.8e-262 907.5 827 56.6
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 2.6e-261 905.6 763 60.2
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 3.7e-260 901.7 765 59.7
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 1.6e-258 896.3 761 59.5
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 2.7e-258 895.6 759 59.0
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 3.6e-255 885.2 763 58.8
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 4.7e-255 884.8 764 58.6
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 1.3e-252 876.7 689 62.7
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 9.2e-251 870.5 665 64.2
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 4.6e-250 868.2 732 59.3
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 3.0e-249 865.5 724 59.9
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 1.4e-246 856.7 734 59.1
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 2.9e-236 822.4 764 55.4
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 1.6e-231 806.6 761 54.7
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 1.8e-230 803.1 754 56.2
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 1.1e-227 793.9 609 62.2
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 7.1e-227 791.2 700 58.7
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 1.0e-225 787.3 655 62.6
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 6.6e-225 784.6 762 51.7
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 1.3e-223 780.4 603 62.4
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.6e-223 780.0 787 52.7
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 1.1e-222 777.3 605 61.5
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.3e-220 770.4 760 52.4
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 4.6e-218 761.9 628 61.8
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 2.6e-213 746.1 765 52.9
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 6.4e-212 741.5 859 49.8
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 9.3e-211 737.6 768 49.7
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 2.5e-208 729.6 764 50.8
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 5.3e-206 721.8 757 52.2
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 6.7e-201 704.9 637 55.6
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 8.7e-201 704.5 500 68.2
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 5.8e-197 691.8 656 55.9
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 5.5e-195 685.3 492 66.3
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 4.2e-187 659.1 655 52.2
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.0e-185 654.4 764 47.5
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 4.3e-184 649.0 453 68.0
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.1e-176 624.4 454 65.0
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 3.8e-172 609.4 526 59.3
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 3.5e-165 586.3 768 43.9
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 5.5e-163 578.9 762 43.0
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 1.7e-156 557.4 602 47.2
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 7.2e-155 552.0 453 62.9
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 6.4e-135 485.7 466 53.6
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 6.6e-132 475.7 580 42.6
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 2.7e-125 453.8 632 44.1
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 8.1e-122 442.2 839 34.8
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 4.1e-118 429.9 384 56.0
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 1.7e-116 424.5 342 62.3
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.4e-110 404.8 540 40.0
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 7.3e-107 392.5 480 42.9
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 6.9e-105 386.0 289 64.0
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.3e-95 355.1 468 41.9
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.0e-88 331.3 243 63.8
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 2.3e-76 291.2 268 59.3
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.7e-61 241.1 125 80.0
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 5.2e-60 236.9 661 29.8
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 9.7e-59 232.6 187 59.9
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 8.5e-55 219.5 261 43.3
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 1.9e-54 218.4 317 42.3
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.2e-50 204.9 144 68.1
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 5.3e-49 200.3 286 38.1
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.5e-46 190.3 126 69.0
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.7e-43 180.3 234 48.3
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.8e-42 177.9 126 66.7
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 7.5e-35 153.3 100 69.0
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.4e-33 149.1 114 55.3
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.0e-28 131.3 169 46.2
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 8.9e-28 129.8 108 53.7
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 5.4e-25 120.6 131 47.3
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 2.3e-20 105.1 83 60.2
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 1.3e-18 99.4 66 62.1
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 3.3e-14 84.7 61 60.7
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 1.2e-13 82.8 145 37.2
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 7.5e-11 73.6 125 38.4
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 1.2e-08 66.2 46 63.0
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 1.6e-08 65.9 40 67.5
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 4.6e-08 64.3 60 48.3
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 2.3e-07 62.0 213 28.6
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 3.0e-07 61.6 38 71.1
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 1.5e-06 59.3 34 76.5
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 4.3e-06 57.8 71 38.0
VMungo0331G0048 Vigna mungo HOM05D000010 ORTHO05D435787 9.5e-06 56.6 47 55.3


User provided reference genes

Program Settings