Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G037050 Populus trichocarpa HOM05D006905 ORTHO05D003398 1.3e-61 239.6 123 100.0
Potri.013G036500 Populus trichocarpa HOM05D006905 ORTHO05D003398 4.3e-49 198.0 113 88.5
Manes.09G156000 Manihot esculenta HOM05D006905 ORTHO05D003398 1.0e-29 133.7 115 60.9
Sabra13G0035600 Salix brachista HOM05D006905 ORTHO05D003398 8.7e-26 120.6 70 85.7
Dinv11554 Davidia involucrata HOM05D006905 ORTHO05D003398 1.3e-24 116.7 114 55.3
Ciclev10002392m.g Citrus clementina HOM05D006905 ORTHO05D003398 8.2e-24 114.0 98 59.2
Cfa006463 Carpinus fangiana HOM05D006905 ORTHO05D003398 1.1e-23 113.6 102 58.8
Cpa.g.sc117.65 Carica papaya HOM05D006905 ORTHO05D003398 1.4e-23 113.2 116 54.3
COL.COLO4_38037 Corchorus olitorius HOM05D006905 ORTHO05D003398 3.1e-23 112.1 127 50.4
Haze_04329 Corylus avellana HOM05D006905 ORTHO05D003398 5.3e-23 111.3 119 54.6
Duzib128G0775 Durio zibethinus HOM05D006905 ORTHO05D003398 5.3e-23 111.3 123 52.8
Prupe.6G339800 Prunus persica HOM05D006905 ORTHO05D003398 3.4e-22 108.6 99 60.6
GSVIVG01021847001 Vitis vinifera HOM05D006905 ORTHO05D003398 1.7e-21 106.3 115 53.0
MD04G1220800 Malus domestica HOM05D006905 ORTHO05D003398 2.2e-21 105.9 122 51.6
Thecc.05G193600 Theobroma cacao HOM05D006905 ORTHO05D003398 8.5e-21 104.0 111 53.2
EL10Ac4g09180 Beta vulgaris HOM05D006905 ORTHO05D003398 1.1e-20 103.6 116 49.1
RcHm_v2.0_Chr3g0451941 Rosa chinensis HOM05D006905 ORTHO05D003398 5.5e-20 101.3 120 52.5
Actinidia30925 Actinidia chinensis HOM05D006905 ORTHO05D003398 9.3e-20 100.5 114 51.8
Gohir.A08G226300 Gossypium hirsutum HOM05D006905 ORTHO05D003398 1.2e-19 100.1 127 49.6
FvH4_6g03440 Fragaria vesca HOM05D006905 ORTHO05D003398 2.1e-19 99.4 118 50.0
Gorai.004G263200 Gossypium raimondii HOM05D006905 ORTHO05D003398 2.1e-19 99.4 127 48.8
vmacro05070 Vaccinium macrocarpon HOM05D006905 ORTHO05D003398 7.9e-19 97.4 123 47.2
Gohir.D08G246700 Gossypium hirsutum HOM05D006905 ORTHO05D003398 1.0e-18 97.1 127 48.0
Hund22112 Selenicereus undatus HOM05D006905 ORTHO05D003398 1.4e-18 96.7 113 46.0
Gohir.A01G104050 Gossypium hirsutum HOM05D006905 ORTHO05D003398 2.3e-18 95.9 126 49.2
CsaV3_2G004310 Cucumis sativus L. HOM05D006905 ORTHO05D003398 3.9e-18 95.1 114 45.6
TWI56G1496 Tripterygium wilfordii HOM05D006905 ORTHO05D003398 3.9e-18 95.1 116 48.3
CiPaw.07G006400 Carya illinoinensis HOM05D006905 ORTHO05D003398 6.7e-18 94.4 90 53.3
QL03p024500 Quercus lobata HOM05D006905 ORTHO05D003398 1.5e-17 93.2 101 51.5
TAR636G1711 Trochodendron aralioides HOM05D006905 ORTHO05D003398 1.5e-17 93.2 114 48.2
CANSAT54G0047 Cannabis sativa HOM05D006905 ORTHO05D003398 2.5e-17 92.4 97 51.5
Sed0006348 Sechium edule HOM05D006905 ORTHO05D003398 2.5e-17 92.4 114 49.1
FAN05G2111 Fragaria x ananassa HOM05D006905 ORTHO05D003398 3.3e-17 92.0 118 47.5
PGR083G0691 Punica granatum HOM05D006905 ORTHO05D003398 3.3e-17 92.0 111 49.5
Nn4g26306 Nelumbo nucifera HOM05D006905 ORTHO05D003398 5.7e-17 91.3 115 44.3
FAN14G2439 Fragaria x ananassa HOM05D006905 ORTHO05D003398 9.7e-17 90.5 118 46.6
Nitab4.5_0013433g0040 Nicotiana tabacum HOM05D006905 ORTHO05D003398 9.7e-17 90.5 117 43.6
Aqoxy5G00478 Aquilegia oxysepala HOM05D006905 ORTHO05D003398 1.3e-16 90.1 112 42.9
PGR083G1281 Punica granatum HOM05D006905 ORTHO05D003398 1.3e-16 90.1 123 47.2
Migut.N01907 Erythranthe guttata HOM05D006905 ORTHO05D003398 2.2e-16 89.4 93 49.5
MELO3C004363.2 Cucumis melo HOM05D006905 ORTHO05D003398 3.7e-16 88.6 114 43.9
FAN05G4190 Fragaria x ananassa HOM05D006905 ORTHO05D003398 3.7e-16 88.6 125 48.0
Nitab4.5_0002361g0060 Nicotiana tabacum HOM05D006905 ORTHO05D003398 6.3e-16 87.8 117 42.7
Sc20g0000270 Simmondsia chinensis HOM05D006905 ORTHO05D003398 6.3e-16 87.8 114 41.2
Atru.chr2.731 Acer truncatum HOM05D006905 ORTHO05D003398 1.1e-15 87.0 123 44.7
Peaxi162Scf00404g00025 Petunia axillaris HOM05D006905 ORTHO05D003398 1.1e-15 87.0 115 42.6
CSS0017923 Camellia sinensis var. sinensis HOM05D006905 ORTHO05D003398 1.8e-15 86.3 118 44.9
ClCG02G016440 Citrullus lanatus HOM05D006905 ORTHO05D003398 1.8e-15 86.3 101 46.5
FAN02G2898 Fragaria x ananassa HOM05D006905 ORTHO05D003398 2.4e-15 85.9 118 45.8
Atru.chr2.743 Acer truncatum HOM05D006905 ORTHO05D003398 4.1e-15 85.1 123 43.9
SGA_v2.0_scaffold5G02928 Striga asiatica HOM05D006905 ORTHO05D003398 4.1e-15 85.1 94 48.9
CAN.G134.166 Capsicum annuum HOM05D006905 ORTHO05D003398 6.9e-15 84.3 116 43.1
FAN09G1595 Fragaria x ananassa HOM05D006905 ORTHO05D003398 6.9e-15 84.3 118 45.8
Rhsim07G0175500 Rhododendron simsii HOM05D006905 ORTHO05D003398 1.2e-14 83.6 123 44.7
Aa31LG5G15280 Aethionema arabicum HOM05D006905 ORTHO05D003398 2.0e-14 82.8 106 45.3
THA.LOC104802823 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 1.3e-13 80.1 93 46.2
Solyc01g097820.4 Solanum lycopersicum HOM05D006905 ORTHO05D003398 1.7e-13 79.7 115 42.6
Sp3g03710 Schrenkiella parvula HOM05D006905 ORTHO05D003398 2.2e-13 79.3 117 42.7
ECA246G1419 Erigeron canadensis HOM05D006905 ORTHO05D003398 2.9e-13 79.0 117 40.2
Glyma.10G160600 Glycine max HOM05D006905 ORTHO05D003398 5.0e-13 78.2 126 42.9
PGSC0003DMG400022508 Solanum tuberosum HOM05D006905 ORTHO05D003398 5.0e-13 78.2 115 41.7
Eucgr.B01715 Eucalyptus grandis HOM05D006905 ORTHO05D003398 1.4e-12 76.6 90 43.3
Lalb_Chr06g0167991 Lupinus albus HOM05D006905 ORTHO05D003398 2.5e-12 75.9 77 54.5
CARHR079160 Cardamine hirsuta HOM05D006905 ORTHO05D003398 3.2e-12 75.5 120 43.3
Lj5g0004067 Lotus japonicus HOM05D006905 ORTHO05D003398 3.2e-12 75.5 98 45.9
Sopen01g041420 Solanum pennellii HOM05D006905 ORTHO05D003398 3.2e-12 75.5 94 44.7
VMungo0720G0828 Vigna mungo HOM05D006905 ORTHO05D003398 4.2e-12 75.1 82 52.4
THA.LOC104802824 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 5.5e-12 74.7 103 42.7
TPR.G11158 Trifolium pratense HOM05D006905 ORTHO05D003398 5.5e-12 74.7 125 39.2
BolC5t34896H Brassica oleracea HOM05D006905 ORTHO05D003398 1.6e-11 73.2 119 41.2
Eucgr.L02187 Eucalyptus grandis HOM05D006905 ORTHO05D003398 1.6e-11 73.2 75 50.7
Thhalv10021425m.g Eutrema salsugineum HOM05D006905 ORTHO05D003398 2.7e-11 72.4 115 40.9
HanXRQChr12g0384101 Helianthus annuus HOM05D006905 ORTHO05D003398 2.7e-11 72.4 95 44.2
AL3G15180 Arabidopsis lyrata HOM05D006905 ORTHO05D003398 3.6e-11 72.0 116 40.5
AT3G04890 Arabidopsis thaliana HOM05D006905 ORTHO05D003398 3.6e-11 72.0 117 41.0
Phvul.007G186100 Phaseolus vulgaris HOM05D006905 ORTHO05D003398 3.6e-11 72.0 106 39.6
Carub.0003s0409 Capsella rubella HOM05D006905 ORTHO05D003398 4.7e-11 71.6 118 40.7
BcaNung06537 Brassica carinata HOM05D006905 ORTHO05D003398 7.9e-11 70.9 121 40.5
C05p62430 Brassica napus HOM05D006905 ORTHO05D003398 7.9e-11 70.9 121 40.5
Glyma.20G227801 Glycine max HOM05D006905 ORTHO05D003398 1.0e-10 70.5 77 50.6
Lsat_1_v5_gn_3_28040 Lactuca sativa HOM05D006905 ORTHO05D003398 1.0e-10 70.5 84 44.0
MBI04_g20814_MAGBIO Magnolia biondii HOM05D006905 ORTHO05D003398 1.8e-10 69.7 93 48.4
Psat6g147000 Pisum sativum HOM05D002360 ORTHO05D006297 1.8e-10 69.7 72 50.0
A05p42710 Brassica napus HOM05D006905 ORTHO05D003398 2.3e-10 69.3 119 40.3
Ah.06g192600 Amaranthus hybridus HOM05D002360 ORTHO05D003398 8.8e-10 67.4 79 44.3
ATR0737G167 Amborella trichopoda HOM05D006905 ORTHO05D003398 1.1e-09 67.0 122 40.2
Medtr1g081280 Medicago truncatula HOM05D006905 ORTHO05D003398 1.1e-09 67.0 87 43.7
arahy.Tifrunner.gnm1.ann1.N7GLTS Arachis hypogaea HOM05D006905 ORTHO05D003398 1.5e-09 66.6 79 46.8
BraA05t22982Z Brassica rapa HOM05D006905 ORTHO05D003398 4.4e-09 65.1 120 40.0
arahy.Tifrunner.gnm1.ann1.PI1FXK Arachis hypogaea HOM05D006905 ORTHO05D003398 1.7e-08 63.2 77 45.5
unitig_8.g4913 Utricularia gibba HOM05D006905 ORTHO05D003398 5.3e-07 58.2 97 38.1


User provided reference genes

Program Settings