Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 5.3e-122 441.0 223 100.0
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 6.9e-106 387.5 218 89.4
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 2.1e-86 322.8 226 72.1
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 9.4e-79 297.4 223 69.5
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 1.8e-77 293.1 204 73.5
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 2.0e-76 289.7 218 70.2
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 2.0e-76 289.7 226 66.8
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 2.6e-76 289.3 226 68.1
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 5.7e-76 288.1 196 74.5
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 5.7e-76 288.1 229 67.2
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 9.8e-76 287.3 210 70.5
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 9.8e-76 287.3 190 76.3
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 1.3e-75 287.0 222 68.9
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 1.7e-75 286.6 228 65.8
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 2.8e-75 285.8 229 66.8
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 3.7e-75 285.4 231 65.4
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 6.3e-75 284.6 215 69.3
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 6.3e-75 284.6 206 71.4
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 8.3e-75 284.3 208 69.7
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 1.1e-74 283.9 229 65.9
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.1e-74 283.9 193 74.1
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 1.8e-74 283.1 193 72.0
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 3.1e-74 282.3 192 74.0
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.1e-74 282.3 227 66.1
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 4.1e-74 282.0 229 65.9
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 4.1e-74 282.0 227 66.1
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 5.4e-74 281.6 227 65.6
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 1.6e-73 280.0 225 65.8
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 2.0e-73 279.6 208 69.7
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 2.7e-73 279.3 201 68.2
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 3.5e-73 278.9 209 68.4
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.5e-73 278.9 227 65.2
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 4.5e-73 278.5 231 63.2
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 5.9e-73 278.1 225 65.3
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 1.0e-72 277.3 228 64.0
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 1.0e-72 277.3 192 72.4
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 2.3e-72 276.2 195 70.3
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.3e-72 276.2 226 63.7
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 3.8e-72 275.4 202 67.8
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 6.6e-72 274.6 192 72.4
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 6.6e-72 274.6 205 68.3
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 8.6e-72 274.2 195 70.8
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 1.1e-71 273.9 219 66.2
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 1.5e-71 273.5 213 67.6
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 2.5e-71 272.7 213 65.7
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.3e-71 272.3 226 62.4
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 3.3e-71 272.3 213 65.7
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 4.3e-71 271.9 176 76.7
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 5.6e-71 271.6 211 64.9
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 5.6e-71 271.6 188 74.5
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 1.6e-70 270.0 195 68.7
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.6e-70 270.0 199 67.8
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 2.8e-70 269.2 206 68.0
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 4.7e-70 268.5 222 64.4
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 6.1e-70 268.1 195 68.7
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 6.1e-70 268.1 199 69.8
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 3.0e-69 265.8 191 69.1
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 5.2e-69 265.0 223 63.2
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 5.2e-69 265.0 248 59.3
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 5.2e-69 265.0 186 74.2
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 6.8e-69 264.6 223 63.2
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.5e-68 263.5 194 70.6
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 2.6e-68 262.7 197 66.5
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 5.7e-68 261.5 218 61.5
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 5.7e-68 261.5 194 70.6
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 5.7e-68 261.5 177 72.3
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 7.5e-68 261.2 222 62.6
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 7.5e-68 261.2 195 67.7
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 7.5e-68 261.2 194 67.0
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 7.5e-68 261.2 176 75.0
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 9.8e-68 260.8 189 68.8
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 2.9e-67 259.2 189 68.8
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 6.4e-67 258.1 188 68.6
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 6.4e-67 258.1 189 68.3
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 6.4e-67 258.1 196 65.8
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 1.1e-66 257.3 207 67.1
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 1.8e-66 256.5 217 64.5
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 1.8e-66 256.5 190 66.8
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.4e-66 256.1 222 61.3
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 5.4e-66 255.0 188 67.6
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 7.0e-66 254.6 196 64.8
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 2.0e-65 253.1 225 58.7
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 4.6e-65 251.9 206 65.5
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 3.0e-64 249.2 195 64.1
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 3.0e-64 249.2 195 64.1
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 1.1e-63 247.3 206 61.7
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 4.3e-63 245.4 175 69.1
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 2.8e-62 242.7 224 58.9
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 2.8e-62 242.7 201 65.2
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 6.2e-62 241.5 186 65.6
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.4e-61 240.4 144 80.6
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 2.3e-61 239.6 317 48.3
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 2.6e-60 236.1 192 61.5
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 7.5e-60 234.6 181 67.4
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 4.1e-58 228.8 143 76.2
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 2.0e-57 226.5 185 61.1
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 4.6e-57 225.3 185 61.6
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 1.7e-56 223.4 185 60.5
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 3.0e-56 222.6 277 46.9
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 2.6e-52 209.5 189 57.7
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 6.4e-51 204.9 183 60.1
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 1.2e-49 200.7 156 66.7
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 7.8e-49 198.0 150 67.3
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 3.6e-46 189.1 152 63.2
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.5e-39 167.2 98 81.6
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 1.7e-35 153.7 161 52.2
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.2e-35 153.3 98 72.4
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 1.1e-34 151.0 161 50.3
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 4.2e-34 149.1 161 50.3
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 2.5e-31 139.8 166 47.0
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 1.4e-26 124.0 80 72.5
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.4e-26 123.2 134 53.7
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 7.1e-26 121.7 78 73.1
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 7.1e-26 121.7 78 73.1
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.3e-24 117.5 78 70.5
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 2.4e-21 106.7 118 54.2
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 5.3e-21 105.5 155 43.2
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 2.9e-19 99.8 61 75.4
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 8.4e-19 98.2 61 73.8
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 1.2e-17 94.4 78 62.8
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.3e-16 90.1 54 79.6
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 3.2e-10 69.7 40 77.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 1.6e-09 67.4 40 75.0
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 2.7e-09 66.6 39 76.9
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 7.9e-09 65.1 39 74.4
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 3.3e-07 59.7 48 66.7


User provided reference genes

Program Settings