Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 2342.8 1209 100.0
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 2092.0 1166 91.7
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1916.7 1211 81.1
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1906.3 1213 79.6
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1887.1 1210 78.9
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1887.1 1213 79.2
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1885.9 1201 79.1
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1860.9 1212 78.6
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1853.2 1212 78.0
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1846.2 1205 78.3
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1840.1 1212 77.1
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1838.5 1211 76.6
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1833.5 1216 77.0
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1832.4 1202 78.2
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1808.9 1209 75.8
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1807.7 1212 76.1
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1800.8 1210 75.1
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1798.9 1210 76.0
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1797.3 1202 75.4
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1791.9 1213 75.3
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1788.9 1211 74.6
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1786.2 1184 76.0
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1783.1 1206 74.5
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1781.1 1206 75.0
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1779.6 1205 75.4
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1777.7 1205 74.9
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1773.1 1212 73.8
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1755.3 1206 73.5
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1754.2 1201 74.2
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1753.4 1206 73.5
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1749.9 1206 73.2
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1748.8 1210 74.5
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1746.9 1206 73.0
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1746.1 1206 73.1
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1743.4 1200 73.9
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1737.6 1179 75.8
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1735.3 1210 72.6
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1734.9 1216 72.4
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1728.8 1170 75.1
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1727.2 1204 72.8
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1726.5 1200 73.4
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1722.6 1213 71.8
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1718.0 1228 71.3
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1711.0 1200 73.0
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1709.1 1210 71.0
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1708.3 1202 72.9
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1701.8 1206 72.1
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1698.7 1212 70.5
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1697.6 1210 70.9
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1692.6 1210 71.9
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1688.3 1210 70.4
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1681.8 1211 69.9
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1671.4 1206 70.0
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1670.6 1209 70.7
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1662.5 1210 69.8
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1655.2 1208 70.0
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1654.8 1205 70.3
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1654.4 1203 70.3
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1652.1 1204 68.6
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1647.5 1202 70.1
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1645.6 1205 69.0
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1644.8 1210 68.8
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1644.0 1211 68.5
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1644.0 1169 71.3
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1643.2 1205 68.9
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1640.2 1206 69.1
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1640.2 1206 69.0
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1639.8 1211 70.8
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1632.1 1205 69.7
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1629.4 1209 68.3
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1626.3 1213 68.8
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1625.5 1194 68.7
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1624.8 1208 68.5
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1623.2 1207 68.0
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1606.3 1208 67.5
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1605.1 1211 67.4
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1604.7 1200 69.7
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1596.6 1209 68.0
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1595.5 1198 67.0
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1593.9 1214 66.6
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1593.2 1186 68.0
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1590.9 1194 67.5
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1582.0 1182 68.7
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1578.1 1184 67.7
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1576.2 1204 66.9
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1573.5 1124 70.9
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1573.1 1199 66.1
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1540.4 1211 66.0
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1539.2 1261 64.7
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1503.8 1205 65.1
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1477.2 1138 66.1
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1461.8 1291 61.3
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1460.7 991 75.3
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1456.8 1145 65.4
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1432.5 1027 70.2
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1407.9 1206 62.7
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1389.8 1183 60.7
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1388.2 1200 59.3
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1379.8 1202 58.3
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1362.8 1216 59.4
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1287.7 1050 63.4
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1229.2 966 67.9
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1206.4 893 68.0
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1189.5 836 73.6
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1181.4 818 73.7
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1082.8 1148 54.1
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.3e-270 937.2 1232 42.9
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 2.2e-270 936.4 1236 43.8
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.4e-269 932.9 1229 43.2
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 6.8e-264 914.8 650 72.2
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 1.7e-254 883.6 1185 45.7
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 8.3e-246 854.7 1157 44.7
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 7.3e-242 841.6 1169 44.5
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 6.2e-241 838.6 1157 44.1
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 8.1e-233 811.6 976 48.7
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 2.6e-231 806.6 1209 39.5
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.4e-224 784.3 800 52.9
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 7.3e-218 761.9 600 66.8
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 6.9e-216 755.4 1217 38.3
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.0e-203 713.4 570 63.3
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.2e-197 693.3 628 58.0
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.8e-187 661.0 539 62.0
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 5.0e-174 616.3 493 68.4
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 4.2e-173 613.2 416 74.5
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.4e-152 545.0 489 58.3
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 1.4e-123 448.7 321 71.7
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.6e-111 408.7 297 70.7
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 2.5e-80 305.1 1397 23.1
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.6e-79 302.4 267 57.3
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.4e-75 289.3 210 69.0
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 2.4e-75 288.5 210 67.6
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 3.6e-71 274.6 187 76.5
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 3.1e-59 235.0 233 55.4
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 4.4e-53 214.5 433 32.3
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 5.0e-49 201.1 507 30.0
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.8e-43 182.6 109 83.5
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.2e-36 159.1 1159 20.7
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.6e-26 126.3 96 69.8
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 8.9e-22 110.5 85 67.1
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.9e-16 92.8 346 26.9
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 4.3e-16 91.7 90 54.4
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 1.8e-14 86.3 98 49.0
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 4.0e-14 85.1 93 57.0
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 2.6e-13 82.4 63 68.3
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 2.2e-12 79.3 78 57.7
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 2.9e-12 79.0 50 80.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 2.9e-12 79.0 50 80.0
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 4.9e-12 78.2 79 51.9
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 9.2e-11 73.9 335 23.0
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 2.1e-10 72.8 69 55.1
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.1e-10 72.8 76 48.7
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 3.5e-10 72.0 91 47.3
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 4.6e-10 71.6 108 45.4
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 1.0e-09 70.5 74 54.1
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.3e-09 70.1 54 68.5
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.3e-09 70.1 62 58.1
Sabra13G0031700 Salix brachista HOM05D004384 ORTHO05D037489 3.0e-09 68.9 41 85.4
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.1e-07 62.8 182 27.5
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 2.1e-07 62.8 62 59.7
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 6.8e-06 57.8 36 72.2
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 8.9e-06 57.4 48 56.2


User provided reference genes

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